View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15163_high_11 (Length: 568)
Name: NF15163_high_11
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 9 - 489
Target Start/End: Original strand, 40610886 - 40611381
Alignment:
| Q |
9 |
gcataaagtttggtcaccttcatatgtcatccaaccaacccagtagagcacatctgagaatgaatgaattggattcagttctattgttccaaccagacag |
108 |
Q |
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| T |
40610886 |
gcataaagtttggtcaccttcatatgtcatccaaccaacacagtagagcacatctgagaatgaatgaattggattcagttctattgttacaaccagacag |
40610985 |
T |
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| Q |
109 |
aagtacaatgatgtttttgtggaatatggatttataatttagaaggagaaagttgttaagagatttttggaagnnnnnnngaacagtg----tgttga-- |
202 |
Q |
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| T |
40610986 |
aagtacaatgatgtttttgtggaatatggatttataatttagaaggagaaagttgttaagagatttttggaagaaaaaaagaacagtgtgtatgttgata |
40611085 |
T |
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| Q |
203 |
--------------tatgaagtaaagcatgagagacagttgtattgtgttgtgctagcactagcagcttcagtttcatttgtgacaacagcggtttgtct |
288 |
Q |
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| T |
40611086 |
tgaagtagctgaaatatgaagtaaagcatgagagacagttgtattgtgttgtg------ctagcagcttcagtttcatttgtgacaacagcggtttgtct |
40611179 |
T |
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| Q |
289 |
gcaaattgttttttctgacaattacagcaactaataatcatgccatcaaatg-nnnnnnnnctcatatacctccatatttttataaaaatttacttctat |
387 |
Q |
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| T |
40611180 |
gcaaattgttttttctgacaattacagcaactaataatcatgccatcaaatgtttttttttctcatatacctccatatttttataaaaatttacttctat |
40611279 |
T |
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| Q |
388 |
cttataggtgtcggtattcaactttttatcacgatagactataataattatcgtgggaatatgattttaatctatttaaatatgagaaatgacgtcacaa |
487 |
Q |
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| T |
40611280 |
cttataggtgtcggtattcaactttttatcacgatagactataataattatcgtgggaatatgattttaatctatttaaatatgagaaatgacgtcacaa |
40611379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 202 - 551
Target Start/End: Original strand, 40611099 - 40611429
Alignment:
| Q |
202 |
atatgaagtaaagcatgagagacagttgtattgtgttgtgctagcactagcagcttcagtttcatttgtgacaacagcggtttgtctgcaaattgttttt |
301 |
Q |
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| T |
40611099 |
atatgaagtaaagcatgagagacagttgtattgtgttgtgctagca------gcttcagtttcatttgtgacaacagcggtttgtctgcaaattgttttt |
40611192 |
T |
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| Q |
302 |
tctgacaattacagcaactaataatcatgccatcaaatgnnnnnnnn-ctcatatacctccatatttttataaaaatttacttctatcttataggtgtcg |
400 |
Q |
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| T |
40611193 |
tctgacaattacagcaactaataatcatgccatcaaatgtttttttttctcatatacctccatatttttataaaaatttacttctatcttataggtgtcg |
40611292 |
T |
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| Q |
401 |
gtattcaactttttatcacgatagactataataattatcgtgggaatatgattttaatctatttaaatatgagaaatgacgtcacaacannnnnnncata |
500 |
Q |
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| T |
40611293 |
gtattcaactttttatcacgatagactataataattatcgtgggaatatgattttaatctatttaaatatgagaaatgacgtcacaaca----------- |
40611381 |
T |
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| Q |
501 |
tttatattatgattttattacattgacttttgtggtgttgaagtttaaact |
551 |
Q |
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| T |
40611382 |
ttt---ttttcatattattacattgacttttgtggtgttgaagtttaaact |
40611429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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