View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15163_high_120 (Length: 243)

Name: NF15163_high_120
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15163_high_120
NF15163_high_120
[»] chr7 (1 HSPs)
chr7 (53-222)||(3417516-3417685)
[»] chr5 (2 HSPs)
chr5 (60-222)||(12540706-12540868)
chr5 (62-222)||(28385355-28385515)
[»] chr2 (3 HSPs)
chr2 (60-222)||(13448384-13448546)
chr2 (53-222)||(13440221-13440390)
chr2 (53-222)||(13454855-13455024)
[»] chr4 (3 HSPs)
chr4 (62-224)||(48965348-48965510)
chr4 (53-219)||(48958168-48958337)
chr4 (53-123)||(48961413-48961486)
[»] chr6 (2 HSPs)
chr6 (53-174)||(12483450-12483577)
chr6 (89-224)||(12590197-12590332)


Alignment Details
Target: chr7 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 53 - 222
Target Start/End: Original strand, 3417516 - 3417685
Alignment:
Q  53 tggttgtcgaagggatttgaggagagaaacattggaaagaagggtttgatcgttaggggttgggccccacaggttcagatattgagccatcctgcggtag 152  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3417516 tggttgccgaagggatttgaggagagaaacattggaaagaagggtttgatcgttaggggttgggccccacaggttcagatattgagccaccctgcggtag 3417615  T
Q  153 ggggatttatgacacattgtggggggaactcattcgtagaggctgttagtgcgggagttccaatgataac 222  Q
    |||||||||||||||||||||||||||||||||| || ||||||||| |||| |||||||||||||||||    
T  3417616 ggggatttatgacacattgtggggggaactcatttgttgaggctgttggtgcaggagttccaatgataac 3417685  T

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Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 60 - 222
Target Start/End: Complemental strand, 12540868 - 12540706
Alignment:
Q  60 cgaagggatttgaggagagaaacattggaaagaagggtttgatcgttaggggttgggccccacaggttcagatattgagccatcctgcggtagggggatt 159  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||    
T  12540868 cgaagggatttgaggagagaaacattggaaaaaagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcggtggggggatt 12540769  T
Q  160 tatgacacattgtggggggaactcattcgtagaggctgttagtgcgggagttccaatgataac 222  Q
    |||||||||||||||||| |||||| | |||||||||||| ||||||||||||||||||||||    
T  12540768 tatgacacattgtgggggaaactcaattgtagaggctgttggtgcgggagttccaatgataac 12540706  T

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Target: chr5; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 62 - 222
Target Start/End: Complemental strand, 28385515 - 28385355
Alignment:
Q  62 aagggatttgaggagagaaacattggaaagaagggtttgatcgttaggggttgggccccacaggttcagatattgagccatcctgcggtagggggattta 161  Q
    |||||||||||||||||||||||||||||||||||||| ||  | ||||||||||||||||| |||| |||||||||| | |||||||| |||||||||     
T  28385515 aagggatttgaggagagaaacattggaaagaagggtttcataatcaggggttgggccccacaagttctgatattgagcaaccctgcggtggggggatttc 28385416  T
Q  162 tgacacattgtggggggaactcattcgtagaggctgttagtgcgggagttccaatgataac 222  Q
    |||||||||| || ||||||||| | |||||||||||| | ||||||||||||||||||||    
T  28385415 tgacacattgcggagggaactcaattgtagaggctgttggcgcgggagttccaatgataac 28385355  T

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Target: chr2 (Bit Score: 111; Significance: 4e-56; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 60 - 222
Target Start/End: Complemental strand, 13448546 - 13448384
Alignment:
Q  60 cgaagggatttgaggagagaaacattggaaagaagggtttgatcgttaggggttgggccccacaggttcagatattgagccatcctgcggtagggggatt 159  Q
    ||||||||||||| |||||||| || || ||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||| || ||||||||    
T  13448546 cgaagggatttgaagagagaaatatcgggaagaagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcagtggggggatt 13448447  T
Q  160 tatgacacattgtggggggaactcattcgtagaggctgttagtgcgggagttccaatgataac 222  Q
    |||||| ||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  13448446 tatgacgcattgcggggggaactcaaccgtagaggctgttagtgcgggagttccaatgataac 13448384  T

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Target: chr2; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 53 - 222
Target Start/End: Complemental strand, 13440390 - 13440221
Alignment:
Q  53 tggttgtcgaagggatttgaggagagaaacattggaaagaagggtttgatcgttaggggttgggccccacaggttcagatattgagccatcctgcggtag 152  Q
    |||||| | |||||||| || |||||||||||| | | || |||||||||| ||| ||||||||||||||| ||| ||||||||||||| |||||||| |    
T  13440390 tggttgccaaagggattcgaagagagaaacattaggaggatgggtttgatcattaagggttgggccccacaagttaagatattgagccaccctgcggtgg 13440291  T
Q  153 ggggatttatgacacattgtggggggaactcattcgtagaggctgttagtgcgggagttccaatgataac 222  Q
    ||||||||||||| ||||| |||||||||||| | |||||| ||||||||||||||||||||||||||||    
T  13440290 ggggatttatgacgcattgcggggggaactcaattgtagagtctgttagtgcgggagttccaatgataac 13440221  T

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Target: chr2; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 53 - 222
Target Start/End: Complemental strand, 13455024 - 13454855
Alignment:
Q  53 tggttgtcgaagggatttgaggagagaaacattggaaagaagggtttgatcgttaggggttgggccccacaggttcagatattgagccatcctgcggtag 152  Q
    |||||| ||||||||||||| |||| |||||| |  || |||||||||||| ||||||||||||||||||| ||| |||||||||| || ||||| || |    
T  13455024 tggttgccgaagggatttgaagagaaaaacatcgagaaaaagggtttgatcattaggggttgggccccacaagttaagatattgagtcaccctgcagtgg 13454925  T
Q  153 ggggatttatgacacattgtggggggaactcattcgtagaggctgttagtgcgggagttccaatgataac 222  Q
    ||||||||||||| ||||| |||||||||||| ||||||||||||||||   ||||||||||||||||||    
T  13454924 ggggatttatgacgcattgcggggggaactcaatcgtagaggctgttagcatgggagttccaatgataac 13454855  T

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Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 62 - 224
Target Start/End: Complemental strand, 48965510 - 48965348
Alignment:
Q  62 aagggatttgaggagagaaacattggaaagaagggtttgatcgttaggggttgggccccacaggttcagatattgagccatcctgcggtagggggattta 161  Q
    |||||||| || |||||||||||||||||||||||||||||  ||||||||||||| || ||||||| |||  ||||||| || || || || |  ||||    
T  48965510 aagggattcgaagagagaaacattggaaagaagggtttgattattaggggttgggctccgcaggttctgattctgagccaccccgctgtgggtgccttta 48965411  T
Q  162 tgacacattgtggggggaactcattcgtagaggctgttagtgcgggagttccaatgataacat 224  Q
    |||| ||||||||  |||||||    || ||||||||| ||||||| ||||| ||||| ||||    
T  48965410 tgactcattgtggttggaactccacagtggaggctgttggtgcgggggttccgatgattacat 48965348  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 53 - 219
Target Start/End: Complemental strand, 48958337 - 48958168
Alignment:
Q  53 tggttgtcgaagggatttgaggagagaaacattggaaagaag---ggtttgatcgttaggggttgggccccacaggttcagatattgagccatcctgcgg 149  Q
    |||||| |||| ||||| || |||||||||||||||||||||   ||||||||| ||||||| ||||||||||| |||  |||  |||||||   ||| |    
T  48958337 tggttgccgaaaggattcgaagagagaaacattggaaagaagaaaggtttgatcattagggggtgggccccacaagttttgattctgagccacattgccg 48958238  T
Q  150 tagggggatttatgacacattgtggggggaactcattcgtagaggctgttagtgcgggagttccaatgat 219  Q
    | || | ||||||||||||||| ||| |||||||    || ||||||||||| ||||| |||||||||||    
T  48958237 tgggtgcatttatgacacattgcgggtggaactccactgtggaggctgttagcgcgggggttccaatgat 48958168  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 123
Target Start/End: Complemental strand, 48961486 - 48961413
Alignment:
Q  53 tggttgtcgaagggatttgaggagagaaacattgga---aagaagggtttgatcgttaggggttgggccccaca 123  Q
    |||||| |||| |||||||| ||||||||||||| |   ||||||||||||||| ||| ||| |||||||||||    
T  48961486 tggttgccgaaaggatttgaagagagaaacattgaaaagaagaagggtttgatcattaaggggtgggccccaca 48961413  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 174
Target Start/End: Original strand, 12483450 - 12483577
Alignment:
Q  53 tggttgtcgaagggatttgaggagagaaacattgga------aagaagggtttgatcgttaggggttgggccccacaggttcagatattgagccatcctg 146  Q
    |||||| |||||||||||||||||||||||||| ||      |||| |||||| ||| | ||||| ||||| |||||||| | ||| |||||||| ||||    
T  12483450 tggttgccgaagggatttgaggagagaaacattagaaggaataagatgggtttaatcatcagggggtgggcaccacaggtactgattttgagccaccctg 12483549  T
Q  147 cggtagggggatttatgacacattgtgg 174  Q
    | || || | ||||||||| || |||||    
T  12483550 cagtgggtgcatttatgactcactgtgg 12483577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 224
Target Start/End: Original strand, 12590197 - 12590332
Alignment:
Q  89 aagaagggtttgatcgttaggggttgggccccacaggttcagatattgagccatcctgcggtagggggatttatgacacattgtggggggaactcattcg 188  Q
    ||||||||||||||| ||||||||||||||||||| ||   |||  |||||||   ||| || || |  |||||||||||||||||  |||| ||  |||    
T  12590197 aagaagggtttgatcattaggggttgggccccacaagtaatgattatgagccacaatgcagtgggcgcgtttatgacacattgtggatggaattccgtcg 12590296  T
Q  189 tagaggctgttagtgcgggagttccaatgataacat 224  Q
    | ||||| |||||||| ||| |||| ||||| ||||    
T  12590297 tggaggcggttagtgctggaattccgatgatcacat 12590332  T

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