View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15163_high_13 (Length: 552)
Name: NF15163_high_13
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-175; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 150 - 539
Target Start/End: Complemental strand, 27501137 - 27500750
Alignment:
| Q |
150 |
ttgtaagtatatttatagttactgagattctttgcaaacctaattccaagataaattattgtttgaaagagttaaaggataagatgatatagcatgtggt |
249 |
Q |
| |
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|||| |||||||||||||||| |||| ||||||| ||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27501137 |
ttgttagtatatttatagttattgaggttctttggaaacccaattacaagctaaattattgtttgaaagagttaaaggataagatgatatagcatgtggt |
27501038 |
T |
|
| Q |
250 |
gttgttttaagatttgtaccccaccctttcaactgcaaccaattatttgttcatgcattaagtagtacttcataattgtgtaagcatgtttcagacatgt |
349 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
27501037 |
gttgttttaagatt-gtaccccaccctttcaactgcaaccacttatttgttcatgcattaagaagtacttcataattgtgtaagcatgtttcagacatgt |
27500939 |
T |
|
| Q |
350 |
tctttgcagtaaaagtagtacca-ttcaagttgattaattatatgctggcctctgctcaacaaggtgggacttgcattatctatctaccacaacatttga |
448 |
Q |
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|||||||||||| ||||||||| |||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27500938 |
tctttgcagtaa--gtagtaccaattcaagttcattaactctatgctggcctctgctcaacaaggtgggacttgcattatctatctaccacaacatttga |
27500841 |
T |
|
| Q |
449 |
tgttgatctttgagaaagtcctcaaaactcgtaaagaaaacaccatgtgatgtttcatttgatcttgtctaaacatgactctaatcctatg |
539 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27500840 |
tgttgatctttgagaaagtcctcaaaactcttaaagaaaacaccatgtgatgtttcatttgatcttgtctaaacatgactctaatcctatg |
27500750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 3 - 350
Target Start/End: Original strand, 27486147 - 27486493
Alignment:
| Q |
3 |
gtcgaaaaatatttaaacggaaacccatttttggtgattgtttgagggagaagaacaaactcaacaaagtaaatatctcaaannnnnnnngaagaatgta |
102 |
Q |
| |
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|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
27486147 |
gtcgaataacatttaaacggaaacccatttttggtgattgtttgagggagaagaacaaactcaacaaagtaaatatctcaaaaaattta-gaagaatgta |
27486245 |
T |
|
| Q |
103 |
actaatacttgaggatgtcaacgacttgtgttgtgtttgaagccaatttgtaagtatatttatagttactgagattctttgcaaacctaattccaagata |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
27486246 |
actaatacttgaggatgtcaacgacttgtgttgtgtttgaagccaatttgtaagtatatttatagttactgagattctttgcaaacctaattccaagcta |
27486345 |
T |
|
| Q |
203 |
aattattgtttgaaagagttaaaggataagatgatatagcatgtggtgttgttttaagatttgtacc-ccaccctttcaactgcaaccaattatttgttc |
301 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| ||||||||||||| | || | || |||| |||||||||||| | ||||| ||||| ||| |
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| T |
27486346 |
aattatttcttgaaagagttaaaggataagatgatataccatgtggtgttgtctaaaca-ttataccaccaccctttcaaattcaacctcatattttttc |
27486444 |
T |
|
| Q |
302 |
atgcattaagtagtacttcataattgtgtaagcatgtttcagacatgtt |
350 |
Q |
| |
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|| |||||| || ||||||||||||||||| ||||||||||||||||| |
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|
| T |
27486445 |
atccattaactatcacttcataattgtgtaaacatgtttcagacatgtt |
27486493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 3 - 350
Target Start/End: Original strand, 27479087 - 27479433
Alignment:
| Q |
3 |
gtcgaaaaatatttaaacggaaacccatttttggtgattgtttgagggagaagaacaaactcaacaaagtaaatatctcaaannnnnnnngaagaatgta |
102 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
27479087 |
gtcgaataacatttaaacggaaacccatttttggtgattgtttgagagagaagaacaaactcaacaaagtaaatatctcaaaaaattta-gaagaatgta |
27479185 |
T |
|
| Q |
103 |
actaatacttgaggatgtcaacgacttgtgttgtgtttgaagccaatttgtaagtatatttatagttactgagattctttgcaaacctaattccaagata |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
27479186 |
actaatacttgaggatgtcaacgacttgtgttgtgtttgaagccaatttgtaagtatatttatagttactgagattctttgcaaacctaattccaagcta |
27479285 |
T |
|
| Q |
203 |
aattattgtttgaaagagttaaaggataagatgatatagcatgtggtgttgttttaagatttgtacc-ccaccctttcaactgcaaccaattatttgttc |
301 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| ||||||||||||| | || | ||||||| |||||||||||| | ||||| ||||| || |
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|
| T |
27479286 |
aattatttcttgaaagagttaaaggataagatgatataccatgtggtgttgtctaaaca-ttgtaccaccaccctttcaagttcaacctcatattttatc |
27479384 |
T |
|
| Q |
302 |
atgcattaagtagtacttcataattgtgtaagcatgtttcagacatgtt |
350 |
Q |
| |
|
|| ||||| || ||||||||||||||||| ||||||||||||||||| |
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|
| T |
27479385 |
atctattaactatcacttcataattgtgtaaacatgtttcagacatgtt |
27479433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 2 - 350
Target Start/End: Complemental strand, 27506635 - 27506291
Alignment:
| Q |
2 |
tgtcgaaaaatatttaaacggaaacccatttttggtgattgtttgagggagaagaacaaactcaacaaagtaaatatctcaaannnnnnnngaagaatgt |
101 |
Q |
| |
|
||||||| || |||||| |||||||||||||||||||||||||||| || ||||||||||||||| |||| ||| ||| |||| ||||||| | |
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|
| T |
27506635 |
tgtcgaataacatttaagcggaaacccatttttggtgattgtttgaaggtgaagaacaaactcaagaaagcaaagatcacaaaaattta--gaagaatct |
27506538 |
T |
|
| Q |
102 |
aactaatacttgaggatgtcaacgacttgtgttgtgtttgaagccaatttgtaagtatatttatagttactgagattctttgcaaacctaattccaagat |
201 |
Q |
| |
|
||||||||||| ||||| ||| |||||||||||||||||| ||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
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|
| T |
27506537 |
aactaatactttaggataccaatgacttgtgttgtgtttgatgcctatttgtaagtatatttatagttactaatattctttgcaaacctaattccaagat |
27506438 |
T |
|
| Q |
202 |
aaattattgtttgaaagagttaaaggataagatgatatagcatgtggtgttgttttaagatttgtaccccaccctttcaactgcaaccaattatttgttc |
301 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| ||||| | |||| |||||| |||||||||||| | ||||| ||||||||| |
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|
| T |
27506437 |
aaattattgtttgaaagaattaaaggataagatgatatagcatgtgg-gttgtctaaaga-ttgtacaccaccctttcaaattcaacctcatatttgttc |
27506340 |
T |
|
| Q |
302 |
atgcattaagtagtacttcataattgtgtaagcatgtttcagacatgtt |
350 |
Q |
| |
|
||||||||| || ||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
27506339 |
atgcattaactatcacttcataattttgtaaacatgtttcagacatgtt |
27506291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 373 - 539
Target Start/End: Original strand, 27466375 - 27466540
Alignment:
| Q |
373 |
ttcaagttgattaattatatgctggcctctgctcaacaaggtgggacttgcattatctatctaccacaacatttgatgttgatctttgagaaagtcctca |
472 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27466375 |
ttcaagttgattaattatatgctggcctctgctcaacaaggtgggacttgcattatctatctaccacaacatttgatgttgatctttgagaaagtcctca |
27466474 |
T |
|
| Q |
473 |
aaactcgtaaagaaaacaccatgtgatgtttcatttgatcttgtctaaacatgactctaatcctatg |
539 |
Q |
| |
|
|||||| | |||| |||||||||||||||||||| || |||||||| | |||||||| |||| |||| |
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|
| T |
27466475 |
aaactc-ttaagacaacaccatgtgatgtttcatatgctcttgtctgaccatgactcaaatcttatg |
27466540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 373 - 539
Target Start/End: Complemental strand, 27517188 - 27517023
Alignment:
| Q |
373 |
ttcaagttgattaattatatgctggcctctgctcaacaaggtgggacttgcattatctatctaccacaacatttgatgttgatctttgagaaagtcctca |
472 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27517188 |
ttcaagttgattaattatatgctggcctctactcaacaaggtgggacttgcattatctacctaccacaacatttgatgttgatctttgagaaagtcctct |
27517089 |
T |
|
| Q |
473 |
aaactcgtaaagaaaacaccatgtgatgtttcatttgatcttgtctaaacatgactctaatcctatg |
539 |
Q |
| |
|
||| || | |||| |||||||||||| ||||||| || | |||||| ||||| |||||||||||||| |
|
|
| T |
27517088 |
aaattc-tgaagacaacaccatgtgacgtttcatatgctgttgtctgaacataactctaatcctatg |
27517023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 373 - 529
Target Start/End: Original strand, 27473448 - 27473603
Alignment:
| Q |
373 |
ttcaagttgattaattatatgctggcctctgctcaacaaggtgggacttgcattatctatctaccacaacatttgatgttgatctttgagaaagtcctca |
472 |
Q |
| |
|
|||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
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|
| T |
27473448 |
ttcaagttcattaactctatgctggcctctgctcaacaaggtgggacttgcattatctatctaccacaagatttgatgttgatccttgagaaagtcctct |
27473547 |
T |
|
| Q |
473 |
aaactcgtaaagaaaacaccatgtgatgtttcatttgatcttgtctaaacatgactc |
529 |
Q |
| |
|
||| || |||||| |||||||||||||||||||| || |||||||| |||||||||| |
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|
| T |
27473548 |
aaattc-taaagacaacaccatgtgatgtttcatatgctcttgtctgaacatgactc |
27473603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 106 - 227
Target Start/End: Complemental strand, 27527001 - 27526881
Alignment:
| Q |
106 |
aatacttgaggatgtcaacgacttgtgttgtgtttg-aagccaatttgtaagtatatttatagttactgagattctttgcaaacctaattccaagataaa |
204 |
Q |
| |
|
||||||||| |||| ||| |||||||||| | |||| ||| || |||||||||||||||||||||||||| |||| || ||||||||||||||| |||| |
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|
| T |
27527001 |
aatacttgacgatgccaatgacttgtgttatttttggaag--aaattgtaagtatatttatagttactgaggttctctggaaacctaattccaagctaaa |
27526904 |
T |
|
| Q |
205 |
ttattgtttgaaagagttaaagg |
227 |
Q |
| |
|
||||||||| ||||||||||||| |
|
|
| T |
27526903 |
ttattgtttaaaagagttaaagg |
27526881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 154 - 274
Target Start/End: Original strand, 27473128 - 27473256
Alignment:
| Q |
154 |
aagtatatttatagttactgagattctttgcaaacctaattccaagataaattattgtttgaaagagttaa---------aggataagatgatatagcat |
244 |
Q |
| |
|
||||||||||||||||| |||| |||| || ||| | ||||||||| ||||||||| ||||||| ||||| || ||||||| ||||||||| |
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|
| T |
27473128 |
aagtatatttatagttattgaggttctctgaaaatccaattccaagctaaattattatttgaaattgttaacgattaaatagcataagataatatagcat |
27473227 |
T |
|
| Q |
245 |
gtggtgttgttttaagatttgtaccccacc |
274 |
Q |
| |
|
||||||||| |||||| |||||||||||| |
|
|
| T |
27473228 |
ttggtgttgtcttaaga-ttgtaccccacc |
27473256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 487 - 539
Target Start/End: Complemental strand, 27489462 - 27489410
Alignment:
| Q |
487 |
aacaccatgtgatgtttcatttgatcttgtctaaacatgactctaatcctatg |
539 |
Q |
| |
|
||||||||||||| |||||| || |||||||| |||||||||| |||| |||| |
|
|
| T |
27489462 |
aacaccatgtgatctttcatatgctcttgtctgaacatgactcaaatcttatg |
27489410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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