View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15163_high_18 (Length: 526)
Name: NF15163_high_18
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 431; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 19 - 514
Target Start/End: Complemental strand, 46936421 - 46935925
Alignment:
| Q |
19 |
aggatgatgatggtgtcattattttgcaannnnnnnggacatttgtgagactgacaatttataatttgttaaaccttattgtgtgatttgacagatatca |
118 |
Q |
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| T |
46936421 |
aggatgatgatggtgtcattattttgcaatttttttggacatttgtgagactgacaatttataatttgttaaaccttattgtgtgatttgacagatatca |
46936322 |
T |
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| Q |
119 |
agtgatgaagcaatagaaactgcaaagcttctagcccttaaagaaggcctatttttaagttctaaatagtttctctttcatgactcgtaagatggcaaaa |
218 |
Q |
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| T |
46936321 |
agtgatgaagcaatagaaactgtaaagcttctagcccttaaagaaggcctatttgtaagctctaaatagtttctctttcatgactcgtaagatggcaaaa |
46936222 |
T |
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| Q |
219 |
agaccagaaaatatcaatttgttgagcctctattctgaatattgttttaggttggaatatcatctggagctgctgcggcagctgccattaagatagcaaa |
318 |
Q |
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| T |
46936221 |
agaccagaaaatatcaatttgttgagcctctattctgaatattgttttaggttggaatatcatctggagctgctgcggcagctgccattaagatagcaaa |
46936122 |
T |
|
| Q |
319 |
aagaccagaaaatgctggaaagcttattgttgtaagttgattgaatccatagaaattttgataaaaatattttgaatatctggcacagttggtatgttat |
418 |
Q |
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| T |
46936121 |
aagaccagaaaatgctggaaagcttattgttgtaagttgattgaatccataaaaattttgataaaaatattttgaatatctggcacagttggtatgttat |
46936022 |
T |
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| Q |
419 |
agg-nnnnnnngggtttacatcattgacaattttcattttgatatggtgcaggttgttttccctagctttggtgagaggtacctatcctctgtgctg |
514 |
Q |
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| T |
46936021 |
aggaaaaaaaagggtttacatcattgacaattttcattttgatatggtgcaggttgttttccctagctttggtgagaggtacctatcctctgtgctg |
46935925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 272 - 356
Target Start/End: Original strand, 36288993 - 36289077
Alignment:
| Q |
272 |
ggaatatcatctggagctgctgcggcagctgccattaagatagcaaaaagaccagaaaatgctggaaagcttattgttgtaagtt |
356 |
Q |
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| T |
36288993 |
ggaatttcatcaggagctgctgcagcagctgcaataaaactagggaagagaccagaaaatgcaggaaagctcattgttgtaagtt |
36289077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 320 - 356
Target Start/End: Original strand, 36284023 - 36284059
Alignment:
| Q |
320 |
agaccagaaaatgctggaaagcttattgttgtaagtt |
356 |
Q |
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| T |
36284023 |
agaccagaaaatgcaggaaagctcattgttgtaagtt |
36284059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 272 - 356
Target Start/End: Original strand, 36294559 - 36294642
Alignment:
| Q |
272 |
ggaatatcatctggagctgctgcggcagctgccattaagatagcaaaaagaccagaaaatgctggaaagcttattgttgtaagtt |
356 |
Q |
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| T |
36294559 |
ggaatttcatcaggagctgcagcagcagctgccataaaattaggaaga-gacaagaaaatgcaggaaagctcattgttgtaagtt |
36294642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 4e-27; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 98 - 184
Target Start/End: Original strand, 864024 - 864110
Alignment:
| Q |
98 |
tgtgtgatttgacagatatcaagtgatgaagcaatagaaactgcaaagcttctagcccttaaagaaggcctatttttaagttctaaa |
184 |
Q |
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| T |
864024 |
tgtgtaatttggcagatatcaagtgatgaagcaatagaaactgcgaagcttcttgctcttaaagaaggcctatttgtaagttctaaa |
864110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 257 - 355
Target Start/End: Original strand, 864236 - 864334
Alignment:
| Q |
257 |
atattgttttaggttggaatatcatctggagctgctgcggcagctgccattaagatagcaaaaagaccagaaaatgctggaaagcttattgttgtaagt |
355 |
Q |
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| T |
864236 |
atattgttgtaggtgggaatatcttctggagctgcagctgccgctgcgattaagatagccaaaaggccagaaaatgctgggaagcttattgttgtaagt |
864334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 452 - 513
Target Start/End: Original strand, 865163 - 865224
Alignment:
| Q |
452 |
cattttgatatggtgcaggttgttttccctagctttggtgagaggtacctatcctctgtgct |
513 |
Q |
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| T |
865163 |
cattttgacatggtgcaggtcgtttttccaagctttggcgagaggtacctgtcctctgtgct |
865224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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