View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15163_high_19 (Length: 518)

Name: NF15163_high_19
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15163_high_19
NF15163_high_19
[»] chr7 (3 HSPs)
chr7 (161-436)||(32250991-32251258)
chr7 (419-478)||(32251275-32251334)
chr7 (469-500)||(32251469-32251500)
[»] chr1 (5 HSPs)
chr1 (10-161)||(36232299-36232452)
chr1 (447-491)||(8264920-8264964)
chr1 (89-157)||(36226956-36227022)
chr1 (168-241)||(8264658-8264731)
chr1 (364-425)||(8264823-8264883)
[»] chr3 (1 HSPs)
chr3 (213-280)||(38789110-38789177)


Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-100; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 161 - 436
Target Start/End: Original strand, 32250991 - 32251258
Alignment:
Q  161 tgagcaatgctaagagcaaacgttctaacaaatgcggaacagcacacgcttttaaattaagccacgtcactctttttaaaactcttgttacctgtttacc 260  Q
    |||| |||| |||||||||||| ||||||||| || ||||| ||||| |||||||||||||||||||||||||||| ||||| || ||||||||||||||    
T  32250991 tgagtaatgttaagagcaaacgctctaacaaacgcagaacaacacacacttttaaattaagccacgtcactcttttcaaaacgctagttacctgtttacc 32251090  T
Q  261 ggaacaccaggtttgagtcatctaagtttttacccaattatattattaaaaaataataattaattatcacatctcaaagattctccttcctgcacttttc 360  Q
    |||||||||||||    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||| ||||    
T  32251091 ggaacaccaggtt----tcatttaagtttttacccaattatattattaaaaaataataattaattatcacatc----cgattctccttcctgcacgtttc 32251182  T
Q  361 aacatgaagcaccaaaactccattaaagaaaaatcaaataccaaaacctttcatcagcaacacaacacccatatat 436  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  32251183 aacatgaagcaccaaaactccattaaagaaaaatcaaataccaaaacctttcatcaacaacacaacacccatatat 32251258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 419 - 478
Target Start/End: Original strand, 32251275 - 32251334
Alignment:
Q  419 aacacaacacccatatataagactcacatcaacttcctctcttttctgtcactaacttct 478  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  32251275 aacacaacacccatatataagactcgcatcaacttcctctcttttctgtaactaacttct 32251334  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Original strand, 32251469 - 32251500
Alignment:
Q  469 actaacttctaataccaaactaccgccataat 500  Q
    ||||||||||||||||||||||||||||||||    
T  32251469 actaacttctaataccaaactaccgccataat 32251500  T

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Target: chr1 (Bit Score: 127; Significance: 2e-65; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 10 - 161
Target Start/End: Original strand, 36232299 - 36232452
Alignment:
Q  10 ataatactacttgtactaaaa--tattcaaacgatgaacacgttggttttgcttcttatagaattgcaccgctgcataaaaaatgtattctcgataaaaa 107  Q
    |||||||||||||||| ||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||    
T  36232299 ataatactacttgtacaaaaaaatattcaaatgatgaacacgttggttttgcttcttatagaattgcaccgctgcataaaaaatgtattctcaataacaa 36232398  T
Q  108 gtcaaaaacgggtttagtgtggagaaagcatttagtttccctcattctctctat 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36232399 gtcaaaaacgggtttagtgtggagaaagcatttagtttccctcattctctctat 36232452  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 447 - 491
Target Start/End: Original strand, 8264920 - 8264964
Alignment:
Q  447 tcaacttcctctcttttctgtcactaacttctaataccaaactac 491  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||    
T  8264920 tcaacttcctctcttttctgccactaacttctaacaccaaactac 8264964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 89 - 157
Target Start/End: Complemental strand, 36227022 - 36226956
Alignment:
Q  89 aatgtattctcgataaaaagtcaaaaacgggtttagtgtggagaaagcatttagtttccctcattctct 157  Q
    ||||||||||| |||| |||||||| |||||||||  |||| | |||||||||||||| ||||||||||    
T  36227022 aatgtattctcaataacaagtcaaagacgggttta--gtggtggaagcatttagtttctctcattctct 36226956  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 241
Target Start/End: Original strand, 8264658 - 8264731
Alignment:
Q  168 tgctaagagcaaacgttctaacaaatgcggaacagcacacgcttttaaattaagccacgtcactctttttaaaa 241  Q
    ||||| |||| |||| ||||||||| |||||  | |||| |||| |||||||||||| || |||||||||||||    
T  8264658 tgctaggagctaacgctctaacaaacgcggatgaacacatgcttctaaattaagccaagttactctttttaaaa 8264731  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 425
Target Start/End: Original strand, 8264823 - 8264883
Alignment:
Q  364 atgaagcaccaaaactccattaaagaaaaatcaaataccaaaacctttcatcagcaacacaa 425  Q
    |||||||| |||||||||||||||  ||||||||| ||| ||||||||||| ||| ||||||    
T  8264823 atgaagcatcaaaactccattaaaacaaaatcaaacacc-aaacctttcattagccacacaa 8264883  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 280
Target Start/End: Original strand, 38789110 - 38789177
Alignment:
Q  213 taaattaagccacgtcactctttttaaaactcttgttacctgtttaccggaacaccaggtttgagtca 280  Q
    ||||||||||||| | |||||||| ||||| |  ||||||||||||||   |||||||||||||||||    
T  38789110 taaattaagccacattactcttttcaaaacgccagttacctgtttaccaacacaccaggtttgagtca 38789177  T

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