View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15163_high_2 (Length: 920)
Name: NF15163_high_2
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_high_2 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 748; Significance: 0; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 748; E-Value: 0
Query Start/End: Original strand, 1 - 903
Target Start/End: Complemental strand, 25084263 - 25083361
Alignment:
| Q |
1 |
tttgtggtctgcaattcagaaaagagatgattggagagatgtttgtttcatgtaagtacgatctcatttgtatgcacctaactaaaatatttcaaatttg |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25084263 |
tttgtggtctgcaattcagaaaatagatgattggagagatgtttgtttcgtgtaagtacgatctcatttgtatgcacctaactaaaatatttcaaatttg |
25084164 |
T |
|
| Q |
101 |
tttatcaataatttaattaggggatttgattatttcttagtgatggagttcatctatcaaacgaggggagcgaaatagtaacaaaagagattttgaatgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||| |
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|
| T |
25084163 |
tttatcaataatttaattaggggatttgattatttcttagtgatggagttcatctatcaaacaaggggagtgaaatagtaacaaaagagatattgaatgt |
25084064 |
T |
|
| Q |
201 |
catcgaagaagcagagtgggaaccaagtctatattggaagttaatgccagctgaatttggagaagattctccttatgatatcgtttctcttgatgggaag |
300 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
25084063 |
catcgaagaagcagagtggaaaccaagtctatattggaagttaatgccagctgaatttggagaagattctccttatgatatggtttctcttgatgggaag |
25083964 |
T |
|
| Q |
301 |
acaaatattaatttctccgatgccccttttcctgatggtgtagagtggccttgatatattattccaaattcatggaatccttatggaaattgtatgttca |
400 |
Q |
| |
|
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
25083963 |
ataaatattaatttctccgatgtgccttttcctgatggtgtagagtggccttgatatattattccaaattcatagaatccttatggaaattgtatgttca |
25083864 |
T |
|
| Q |
401 |
atattagatgggtgagcaaaacttgatcatggtttttcactatgtgaataatgaaatttgannnnnnnnnnnnatggtgatttaattgagccaattgttg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
25083863 |
atattagatgggtgagcaaaacttgatcatggtttttcactatgtgaataatgaaatttg-ttttttttttttatggtggtttaattgagccaattgttg |
25083765 |
T |
|
| Q |
501 |
tatcattgatattacatgttcattaagaaatgggtgaacataacttgatcatgaattttcaccatgtgagtagtgaaatttgactcagtattttaatcga |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25083764 |
tatcattgatattacatgttcattaagaaatgggtgaacataacttgatcatgaattttcaccatgtgagtagtgaaatttgactcagtattttaatcga |
25083665 |
T |
|
| Q |
601 |
gccatgttgatggaatagtcaatagatgca-ttattatatacaacaactcacaattagttttacattggagcttttgataccctattgtgcaagtggatt |
699 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
25083664 |
gccatgttgatggaatagtcaatagatgcatttattatatacaacaactcacaattagttttacattggagcttttgataccctattatgcaagtggatt |
25083565 |
T |
|
| Q |
700 |
tagatacactaattaaataagttacatgaatttgtcnnnnnnnnnnnntgaacaagtaacaattatgttagatggatgattggtgaaaaaacactagcaa |
799 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
25083564 |
tacatacactaattaaataagttacatgaatttgtcaaaaaataaaaatgaacaagttacaattatgttagatggatgattggtgaaaaaacactagtaa |
25083465 |
T |
|
| Q |
800 |
tagcaataagactaaaaaattccacatctaagacacgtgattagctttaaaattacatttaacaacactatggattatgacttatgccctaattcattga |
899 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
25083464 |
tagcaataagactaaaaaattccacatctaagacacgtgattagctttaaaattacatttaacaacactatggattacgacttatgccctaattcattga |
25083365 |
T |
|
| Q |
900 |
atca |
903 |
Q |
| |
|
|||| |
|
|
| T |
25083364 |
atca |
25083361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 4 - 360
Target Start/End: Complemental strand, 25071354 - 25071000
Alignment:
| Q |
4 |
gtggtctgcaattcagaaaagagatgattggagagatgtttgtttcatgtaagtacgatctcatttgtatgcacctaa-ctaaaatatttcaaatttgtt |
102 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| | || |||||||||||||| || |||||||||| |||||||||| |
|
|
| T |
25071354 |
gtggtctgcaattcaaaaaagagatgattggagagatttttgtttcatgtaagtatggtcgcatttgtatgcaccaaaactaaaatattacaaatttgtt |
25071255 |
T |
|
| Q |
103 |
tatcaataatttaattaggggatttgattatttcttagtgatggagttcatctatcaaacgaggggagcgaaatagtaacaaaagagattttgaatgtca |
202 |
Q |
| |
|
| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| |||||||||| |
|
|
| T |
25071254 |
tttcaataatttaattaggtggtttgattatttcttagtgatggagttcatctatcaaatgaggggagtgaaatagtaacaaaggagatattgaatgtca |
25071155 |
T |
|
| Q |
203 |
tcgaagaagcagagtgggaaccaagtctatattggaagttaatgccagctgaatttggagaagattctccttatgatatcgtttctcttgatgggaagac |
302 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||| |
|
|
| T |
25071154 |
tcaaagaagcagagtgggaaccaagtctatattggaagttaatgccagctgaatttggagaagattcaccttatgatatggttactcttgatgggaagac |
25071055 |
T |
|
| Q |
303 |
aaatattaatttctccgatgccccttttcctgatggtgtagagtggccttgatatatt |
360 |
Q |
| |
|
| |||||||||||| ||| ||||| ||||| | |||||| ||||||||||||||| |
|
|
| T |
25071054 |
a---attaatttctccaatgtgcctttccctgaagatgtagattggccttgatatatt |
25071000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 3 - 360
Target Start/End: Complemental strand, 25062652 - 25062294
Alignment:
| Q |
3 |
tgtggtctgcaattcagaaaagagatgattggagagatgtttgtttcatgtaagtacgatctcatttgtatgcacctaa-ctaaaatatttcaaatttgt |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| | ||||||||| ||| ||| |||||||||||| |
|
|
| T |
25062652 |
tgtggtctgcaattcagaaaagagatgattggagagatgtttgtttcatgtaagtatggtctcatttatttgcacctaaactataatgtttcaaatttgt |
25062553 |
T |
|
| Q |
102 |
ttatcaataatttaattaggggatttgattatttcttagtgatggagttcatctatcaaacgaggggagcgaaatagtaacaaaagagattttgaatgtc |
201 |
Q |
| |
|
||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| || || |||||||| |
|
|
| T |
25062552 |
ttatccgtaatttaattaggtggtttgattatttcttagtgatggagttcatctatcaaatgaggggagtgaaatagtaacaaaggaaatattgaatgta |
25062453 |
T |
|
| Q |
202 |
atcgaagaagcagagtgggaaccaagtctatattggaagttaatgccagctgaatttggagaagattctccttatgatatcgtttctcttgatgggaaga |
301 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
25062452 |
atcaaagaagcagagtgggaaccaagtctatattggaagctaatgccaactgaatttggagaagattcaccttatgatatagtttctcttgatgggaaga |
25062353 |
T |
|
| Q |
302 |
caaatattaatttctccgatgccccttttcctgatggtgtagagtggccttgatatatt |
360 |
Q |
| |
|
||| | |||||| |||| | | ||||| ||||| | |||||| ||||||||||||||| |
|
|
| T |
25062352 |
caactgttaattactccaacgtgcctttccctgaagatgtagactggccttgatatatt |
25062294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 165; E-Value: 9e-88
Query Start/End: Original strand, 71 - 373
Target Start/End: Complemental strand, 25089975 - 25089669
Alignment:
| Q |
71 |
tatgcacctaa-ctaaaatatttcaaatttgtttatcaataat---ttaattaggggatttgattatttcttagtgatggagttcatctatcaaacgagg |
166 |
Q |
| |
|
||||||||||| ||||||| ||| ||||||||||||||||||| ||| || || | ||||||||||||||||||||||||| ||| |||||| |||| |
|
|
| T |
25089975 |
tatgcacctaatctaaaatgttttaaatttgtttatcaataataatttagtttggtggtttgattatttcttagtgatggagtacatttatcaactgagg |
25089876 |
T |
|
| Q |
167 |
ggagcgaaatagtaacaaaagagattttgaatgtcatcgaagaagcagagtgggaaccaagtctatattggaagttaatgccagctgaatttggagaaga |
266 |
Q |
| |
|
|||| |||||||||||||| ||||| ||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
25089875 |
ggagtgaaatagtaacaaaggagatattgaatgtcataaagaaagcagagtgggaaccaagtctatattgtaagttaatgccagctgaatttggagaaga |
25089776 |
T |
|
| Q |
267 |
ttctccttatgatatcgtttctcttgatgggaagacaaatattaatttctccgatgccccttttcctgatggtgtagagtggccttgatatattattcca |
366 |
Q |
| |
|
| | ||||||||||| ||||||||||| |||||||||| | ||||||||||| ||| ||||||||| | ||||||||||||||||||||||| |||||| |
|
|
| T |
25089775 |
tacaccttatgatatggtttctcttgacgggaagacaactgttaatttctccaatgtgccttttcctcaaggtgtagagtggccttgatatatgattcca |
25089676 |
T |
|
| Q |
367 |
aattcat |
373 |
Q |
| |
|
||||||| |
|
|
| T |
25089675 |
aattcat |
25089669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 25058444 - 25058169
Alignment:
| Q |
1 |
tttgtggtctgcaattcagaaaagagatgattggagagatgtttgtttcatgtaagtacgatctcattt--gtatgcaccta----actaaa-atatttc |
93 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||| ||| ||||||||||||||||| | |||||| | ||||| |||| | |||| |||| || |
|
|
| T |
25058444 |
tttgtggtctttaattcagagaagagatgattggaaagaagtttgtttcatgtaagtgtgctctcatatatgtatgtccctatattaataaatatatatc |
25058345 |
T |
|
| Q |
94 |
aaatttgtttatcaataatttaattaggggatttgattatttcttagtgatggagttcatctatcaaacgaggggagcgaaatagtaacaaaagagattt |
193 |
Q |
| |
|
||||||| | ||||| |||||||||| |||||| |||||| ||||||||||| ||||| | || |||||||| ||||| || |||| || || |
|
|
| T |
25058344 |
aaatttgcatttcaatgatttaattagatgatttggttattttttagtgatggaattcatttctctgctgaggggagtgaaatggtgtcaaaggaaataa |
25058245 |
T |
|
| Q |
194 |
tgaatgtcatcgaagaagcagagtgggaaccaagtctatattggaagttaatgccagctgaatttggagaagattc |
269 |
Q |
| |
|
| || || ||| ||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
25058244 |
ttaaggttatcaaagaagcagagtgggaaccaaatctatattggaagacaatgccagttgaatttggagaagattc |
25058169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 540 - 619
Target Start/End: Complemental strand, 25070248 - 25070169
Alignment:
| Q |
540 |
ataacttgatcatgaattttcaccatgtgagtagtgaaatttgactcagtattttaatcgagccatgttgatggaatagt |
619 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
25070248 |
ataacttgatcatgttttttcaccatgagagtagtgaaacttgactcagtattttaatctagccatgttgaaggaatagt |
25070169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 25090553 - 25090491
Alignment:
| Q |
3 |
tgtggtctgcaattcagaaaagagatgattggagagatgtttgtttcatgtaagtacgatctc |
65 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
25090553 |
tgtggtctgcaatttagaaaagagatgattggaaagatgtttgtttcatgtaagtatgatctc |
25090491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 516 - 583
Target Start/End: Complemental strand, 25058006 - 25057939
Alignment:
| Q |
516 |
atgttcattaagaaatgggtgaacataacttgatcatgaattttcaccatgtgagtagtgaaatttga |
583 |
Q |
| |
|
||||||| ||| |||||||||| ||| |||||||| || | |||||||||||||||||||||||||| |
|
|
| T |
25058006 |
atgttcaataataaatgggtgatcatgacttgatcgtggttattcaccatgtgagtagtgaaatttga |
25057939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 394 - 461
Target Start/End: Complemental strand, 25070424 - 25070357
Alignment:
| Q |
394 |
atgttcaatattagatgggtgagcaaaacttgatcatggtttttcactatgtgaataatgaaatttga |
461 |
Q |
| |
|
|||||||||| |||| ||||| ||||||||| |||||||||||||| ||||| |||||||| |||| |
|
|
| T |
25070424 |
atgttcaatagtagaggggtgggcaaaactttatcatggtttttcagcatgtgggtaatgaaagttga |
25070357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 477 - 526
Target Start/End: Complemental strand, 25070347 - 25070298
Alignment:
| Q |
477 |
gtgatttaattgagccaattgttgtatcattgatattacatgttcattaa |
526 |
Q |
| |
|
|||||||||||||||||||||||| || |||||| || ||||||||||| |
|
|
| T |
25070347 |
gtgatttaattgagccaattgttgggtctttgatactatatgttcattaa |
25070298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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