View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15163_high_20 (Length: 506)
Name: NF15163_high_20
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 16 - 489
Target Start/End: Complemental strand, 592777 - 592303
Alignment:
| Q |
16 |
acaattccatcaaaattaaca---tggtagttgggggtgataaccttagacgacaattgaacatgaatggaggtagtaataactttatagtagatggtgg |
112 |
Q |
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| T |
592777 |
acaattccatcaaaattaacaacatggtagttgggggtgataaccttagacgacaattgaaaatgaatggaggtagtaataactttatagtagatggtgg |
592678 |
T |
|
| Q |
113 |
tgatacatttttatcacaatttcagcagtcatgtttgcatcccaatggttatcaactccacactgttcatgaagccaaattcttaacgtaattgaaaata |
212 |
Q |
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| T |
592677 |
tgatacattt--atcacaatgtcagcagtcatgtttgcatcccaatggttatcaactccacactgttcatgaagccaaattcttaacgtaattgaaaata |
592580 |
T |
|
| Q |
213 |
aaattttacacttcaacttgaattcattatcatattttgataagctggagaagctcttgaattctgtttcgacttgtcatgatcatggtataataatggt |
312 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
592579 |
aaattttacactgcaacttgaattcattatcatattttgataagctggagaagctcttgaattctgtttcgacttgacatgatcatggtataataatggt |
592480 |
T |
|
| Q |
313 |
atcaaacttctgagacttgattgttggttactttatgttgataattgtaaattcctctcttgcaacnnnnnnnggctgtgttgttttctgaaacatgaac |
412 |
Q |
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| T |
592479 |
atcaaacttctgagacttgattgtttgttactttatgttgataattgtaaattcctctcttgcagctttctttggctgtgttgttttctcaaacatgaac |
592380 |
T |
|
| Q |
413 |
caaatttacaggactatttctcaaagtggggatcaagcggtgaagttgatttgaagtatgagcttgagcatctgatc |
489 |
Q |
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| T |
592379 |
caaatttacaggactatttctcaaagtggggatcaagcggtgaagttgatttgaagtatgagcttgagcatctgatc |
592303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 16 - 489
Target Start/End: Original strand, 579651 - 580124
Alignment:
| Q |
16 |
acaattccatcaaaattaaca---tggtagttgggggtgataaccttagacgacaattgaacatgaatggaggtagtaataactttatagtagatggtgg |
112 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||||||| |||| |||||||||||| ||||| | ||||| ||||||||||||||||||| |||| |
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| T |
579651 |
acaattctatcaaaattaacaacatggtagttgggggtgataaacttaaacgacaattgaaaatgaaagcaggtaataataactttatagtagatagtgg |
579750 |
T |
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| Q |
113 |
tgatacatttttatcacaatttcagcagtcatgt--------ttgcatcccaatggttatcaac-tccacactgttcatgaagccaaattcttaacgtaa |
203 |
Q |
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| T |
579751 |
tgatacattt--atcacaatgtcagctgtcatgtactcatgtttgcatct-aatggttatccacctccacacttttcatgaagccaaattctt------- |
579840 |
T |
|
| Q |
204 |
ttgaaaataaaattttacacttcaacttgaattcattatcatattttgataagctggagaagctcttgaattctgtttcgacttgtcatgatcatggtat |
303 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||| |
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| T |
579841 |
-tgaaaataaaattttacactgcaacttgaattcattatcatattttgataagctggagaagctcttgaattctgtttggacttgacatgaccatggtat |
579939 |
T |
|
| Q |
304 |
aataatggtatcaaacttctgagacttgattgttggttactttatgttgataattgtaaattcctctcttgcaacnnnnnnnggctgtgttgttttctga |
403 |
Q |
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|||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||| ||||| | |
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| T |
579940 |
aataatggtatcaaacctctgagacttgattgtttgtttctttatgttgataattgtaaattcctctcttgcaactttctttcactgtgtt-atttctca |
580038 |
T |
|
| Q |
404 |
aacatgaaccaaatttacaggactatttctcaaagtggggatcaagcggtgaagttgatttgaagtatgagcttgagcatctgatc |
489 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
580039 |
aacatgaaccaaatttacaggactatttctcaaagtggggatcaagcggtgaagttgatttgaagtatgagcttgagcatctgatc |
580124 |
T |
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