View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15163_high_25 (Length: 470)
Name: NF15163_high_25
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_high_25 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 13 - 451
Target Start/End: Original strand, 45393105 - 45393540
Alignment:
| Q |
13 |
aatatgaattctatgttcaataaatatgattacggcataaggctctcaacaacatgatcaaacaatgtatgagtttcatgcctcaagtaattattagtag |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45393105 |
aatatgaattctatgttcaataaatatgattacggcataaggctctcaacaacatgatcaaacaatgtatgagtttcatgcctcaagtaattattagtag |
45393204 |
T |
|
| Q |
113 |
caagcactttaacgctacaataggaaagttcaatatgctagtccccatctgataagtgcagcaggatcaagcatctgcacatagttggtggcgaaaacta |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
45393205 |
caagcactttaacgctacaataggaaagttcaatatgctagtccccatctgataagtgcagcaggatcaagcatctgcacatagttggtggtgaaaacta |
45393304 |
T |
|
| Q |
213 |
tcaatctttcccatccaaatgcagactatgaaactcgattaccatctattaacaa--atataaaagattcctgtgcagtagttaccacaagataacaagt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45393305 |
tcaatctttcccatccaaatgcagactatgaaacctgattaccatctattaacaaatatataaaagattcctgtgcagtagttaccacaagataacaagt |
45393404 |
T |
|
| Q |
311 |
ttacaatcaacatcaatgaaaaaataagtgtcatgttatcatagaggttcttctattattccaatctaattgtgaaactgatctaagatattggggatta |
410 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45393405 |
ttacaatcaacatcaatgaaaaaataag-----tgttatcatagaggttcttctattattccaatctaattgtgaaactgatctaagatattggggatta |
45393499 |
T |
|
| Q |
411 |
taaacggagttacaattgtaacaacctgttctactccgcca |
451 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45393500 |
taaacggagttacaattgtaacaacctgttctactccgcca |
45393540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 287
Target Start/End: Original strand, 52739838 - 52739913
Alignment:
| Q |
213 |
tcaatctttcccatccaaatgcagactatgaaactcgattaccatctatt-aacaaatataaaagattcctgtgca |
287 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||| || || ||||| | || |||||||||||| ||||||| |||| |
|
|
| T |
52739838 |
tcaacctttcccacccaaatgcagactatgaaattcaataaccatatgttaaacaaatataaatgattcctatgca |
52739913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 99 - 149
Target Start/End: Original strand, 52739739 - 52739789
Alignment:
| Q |
99 |
gtaattattagtagcaagcactttaacgctacaataggaaagttcaatatg |
149 |
Q |
| |
|
||||||||||| ||||| |||||||| |||||| |||||||||||||||| |
|
|
| T |
52739739 |
gtaattattagcagcaaacactttaaaactacaacaggaaagttcaatatg |
52739789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 230
Target Start/End: Original strand, 31667166 - 31667289
Alignment:
| Q |
103 |
ttattagtagcaagcactttaacgctacaataggaaagttcaatatgctagtccccatctgataagtgcagcaggatcaagcatctgcacatagttggtg |
202 |
Q |
| |
|
||||||| ||||||||||||| ||||| ||||||||||||||||| || ||| |||||||||| |||||||||||| ||| ||||| || | |
|
|
| T |
31667166 |
ttattagcggcaagcactttaaaactacaccaggaaagttcaatatgcctgt-cccttctgataagt---gcaggatcaagcttctacacattattattt |
31667261 |
T |
|
| Q |
203 |
gcgaaaactatcaatctttcccatccaa |
230 |
Q |
| |
|
|||||||| ||||| |||| |||||||| |
|
|
| T |
31667262 |
gcgaaaacaatcaaccttttccatccaa |
31667289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University