View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15163_high_31 (Length: 445)
Name: NF15163_high_31
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_high_31 |
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Alignment Details
Target: chr2 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 18 - 432
Target Start/End: Original strand, 40511914 - 40512317
Alignment:
| Q |
18 |
aaaagtattaatactcaagaagaaatagaagagcttcaattgaagagcaaagacaaacatttcattattatatcaattatttagcttctaagagtgaata |
117 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
40511914 |
aaaagtattaatactcgagaagaaatagaagagcttcaattgaagagcaaagacaaacatttcattattatatcagttatttagcttctaagagtgaata |
40512013 |
T |
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| Q |
118 |
cattatattt-attcaacataatgatataaaacaactagataaagcaaggtaagataatacttgcctcaagtttcttaatccccaccagagacaatagaa |
216 |
Q |
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| T |
40512014 |
cattatattttattcaacataatgatataaaacaactagataaagc------------tacttgcctcaagtttcttaatccccaccagagacaatagaa |
40512101 |
T |
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| Q |
217 |
gtacttattgaagaatggtgatgatgtaactttggaagtcatggcatcagcatatataccaaacggataaaagccggcatttggtgaacataaatttgtg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40512102 |
gtacttattgaagaatggtgatgatgtaactttggaagtcatggcatcagcatatataccaaacggataaaagccggcatttggtgaacataaatttgtg |
40512201 |
T |
|
| Q |
317 |
acattactagctataaaccaagctactcttggagcatctttaatactgtgacaattgaagaatccatattggcaatttgatttctccatattgcacacac |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40512202 |
acattactagctataaaccaagctactcttggagcatctttaatactgtgacaattgaagaatccatattggcaatttgatttctccatattgcacacac |
40512301 |
T |
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| Q |
417 |
ttttccaacatgcttc |
432 |
Q |
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| T |
40512302 |
ttttccaacatgcttc |
40512317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 233 - 432
Target Start/End: Original strand, 40481444 - 40481643
Alignment:
| Q |
233 |
ggtgatgatgtaactttggaagtcatggcatcagcatatataccaaacggataaaagccggcatttggtgaacataaatttgtgacattactagctataa |
332 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40481444 |
ggtgatgatgtaactttggaagtcatggcatcagcatatataccaaacggataaaagccggcatttggtgaacataaatttgtgacattactagctataa |
40481543 |
T |
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| Q |
333 |
accaagctactcttggagcatctttaatactgtgacaattgaagaatccatattggcaatttgatttctccatattgcacacacttttccaacatgcttc |
432 |
Q |
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| T |
40481544 |
accaagctactcttggagcatctttaatactgtgacaattgaagaatccatattggcaatttgatttctccatattgcacacacttttccaacatgcttc |
40481643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 197 - 324
Target Start/End: Complemental strand, 21612726 - 21612599
Alignment:
| Q |
197 |
ccccaccagagacaatagaagtacttattgaagaatggtgatgatgtaactttggaagtcatggcatcagcatatataccaaacggataaaagccggcat |
296 |
Q |
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||||||||||||||| ||||||||||||| ||||||| || | |||||||||||| |||| |||||| |||||||||||||| |||||||| | || |
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| T |
21612726 |
ccccaccagagacaaaagaagtacttattaaagaatgcagaggttgtaactttggatgtcactgcatcaccatatataccaaactgataaaagagagaat |
21612627 |
T |
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| Q |
297 |
ttggtgaacataaatttgtgacattact |
324 |
Q |
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||||||| |||||||||||||||||||| |
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| T |
21612626 |
ttggtgagcataaatttgtgacattact |
21612599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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