View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15163_high_35 (Length: 439)
Name: NF15163_high_35
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_high_35 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 431
Target Start/End: Complemental strand, 41704284 - 41703833
Alignment:
| Q |
1 |
tacacatttgaattttaaaatccgatagggaaaatgttatgaacttgcattttccgcattctaaaatttggatgtgtaagatttaattttttgttgttca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41704284 |
tacacatttgaattttaaaatccgatagggaaaatgttatgaacttgcattttccgcattctaaaatttggatgtgtaagatttaattttttgttgttca |
41704185 |
T |
|
| Q |
101 |
tattatatattgatcttaactagccaaactaacaaacatgaactaatttgtaaccaattagtaactacttt-taacaaactctaacaatatctaatgatt |
199 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||| | || |||| | | |||||||||||||||||| |
|
|
| T |
41704184 |
cattatatattgatcttaactagctaaactaacaaacatgaactaatttgtaactaat-agtaaccaattagtaactacttttaacaatatctaatgatt |
41704086 |
T |
|
| Q |
200 |
ctctaattataactaacgttagctcacctcaatgtctagttattggtactcaataaaaaagaatgacattacaagaggtggtgtcttcggattgtgtata |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41704085 |
ctctaattataactaacgttagctcacctcaatgtctagttattggtactcaataaaaaagaatgacattacaagaggtggtgtcttcggattgtgtata |
41703986 |
T |
|
| Q |
300 |
gtgccaaggtaaacaagaggtggaatatcacttgttatgtat---------------------tatagtttcaaaactaagaactaacatgagttaattg |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
41703985 |
gtgccaaggtaaacaagaggtggaatatcacttgttatgtattatacaagctaacatctgtattatactttcaaaactaagaactaacatgagttaattg |
41703886 |
T |
|
| Q |
379 |
ttcattaaaacctaacaaaacgtcttagctaacaaggatactataatgttata |
431 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
41703885 |
ttcattaaaacctaaaaaaacgtcttagctaacaaggatcctataatgttata |
41703833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 342 - 432
Target Start/End: Original strand, 41467192 - 41467282
Alignment:
| Q |
342 |
tatagtttcaaaactaagaactaacatgagttaattgttcattaaaacctaacaaaacgtcttagctaacaaggatactataatgttatag |
432 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||| |||||| |
|
|
| T |
41467192 |
tatactttcaaaactaataactaacatgagttaattgttcattaaaacctaacaaaaggtcatggctaacaaggatactataattttatag |
41467282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 342 - 437
Target Start/End: Original strand, 36467105 - 36467201
Alignment:
| Q |
342 |
tatagtttcaaaactaagaactaacatgagttaattgttcattaaaacctaacaaaacgtct-tagctaacaaggatactataatgttatagtccat |
437 |
Q |
| |
|
|||| ||||||| ||||||||||| |||||||||||||||||||||| ||||||||| | || | ||||||||||||||||||||||||||| |||| |
|
|
| T |
36467105 |
tatactttcaaagctaagaactaaaatgagttaattgttcattaaaatctaacaaaagggctatggctaacaaggatactataatgttatagcccat |
36467201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 33826671 - 33826623
Alignment:
| Q |
162 |
taactacttttaacaaactctaacaatatctaatgattctctaattata |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
33826671 |
taactacttttaacaaactctaacaatatctatcaattcactaattata |
33826623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 205
Target Start/End: Complemental strand, 10908990 - 10908947
Alignment:
| Q |
162 |
taactacttttaacaaactctaacaatatctaatgattctctaa |
205 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| | ||||||| |
|
|
| T |
10908990 |
taactacatttaacaaactctaacaatatctaataaatctctaa |
10908947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University