View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15163_high_36 (Length: 437)
Name: NF15163_high_36
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_high_36 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 11 - 419
Target Start/End: Complemental strand, 29839945 - 29839537
Alignment:
| Q |
11 |
cagagagagtagtactatgtaggaagacataataaccaagtataacgacgcaaataactgagaggaaaagcgtataccttagcttcaacatatttccatt |
110 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29839945 |
cagagagagtagtactatgctggaagacataataaccaagtataacgacataaataactgagaggaaaagcgtataccttagcttcaacatatttccatt |
29839846 |
T |
|
| Q |
111 |
tcacaagaaggtgatgtttttctccccatccattcgctagcggaaggttcataatgttatcttgagcctgtaaaacagaacaatgtaagtaatcaaatca |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29839845 |
tcacaagaaggtgatgtttttctccccatccattcgctagcggaaggttcataatgttatcttgagcctgtaaaacagaacaatgtaagtaatcaaatca |
29839746 |
T |
|
| Q |
211 |
attttttctgaacaaatgcacacaagttaaagacataaaaagagcttattgaataaaaacaaacatatctaaggacaaaataaatgttatgacacaatgc |
310 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29839745 |
attttttctgaacaaatgcacacatgttaaagacataaaaagagcttattgaataaaaacaaacatatctaaggacaaaataaatgttatgacacaatgc |
29839646 |
T |
|
| Q |
311 |
agacctaaaaggaaacaagtcgaacatcccataagaaattttcgacataaggnnnnnnnncagtcaagtacggatctcatatcataagaaacaagttatc |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
29839645 |
agacctaaaaggaaacaagtcgaacatcccataagaaattttcgacataagcaaaaaaaacagttaagtacggatctcatatcataagaaacaagttatc |
29839546 |
T |
|
| Q |
411 |
atacctgtt |
419 |
Q |
| |
|
||||||||| |
|
|
| T |
29839545 |
atacctgtt |
29839537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 123 - 180
Target Start/End: Original strand, 34625322 - 34625379
Alignment:
| Q |
123 |
gatgtttttctccccatccattcgctagcggaaggttcataatgttatcttgagcctg |
180 |
Q |
| |
|
|||||||||| ||||| |||||||||| |||||| ||||||||||||||||| ||||| |
|
|
| T |
34625322 |
gatgtttttcaccccaaccattcgctaacggaagattcataatgttatcttgtgcctg |
34625379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University