View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15163_high_42 (Length: 423)

Name: NF15163_high_42
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15163_high_42
NF15163_high_42
[»] chr6 (18 HSPs)
chr6 (20-245)||(17149222-17149446)
chr6 (20-109)||(17166868-17166957)
chr6 (20-179)||(17135441-17135594)
chr6 (282-413)||(17149542-17149658)
chr6 (282-348)||(9208296-9208363)
chr6 (304-356)||(6691531-6691583)
chr6 (304-356)||(9583409-9583461)
chr6 (290-341)||(11448922-11448974)
chr6 (290-344)||(10377763-10377817)
chr6 (306-348)||(28028581-28028623)
chr6 (290-342)||(15360192-15360245)
chr6 (290-341)||(654240-654292)
chr6 (290-341)||(3222729-3222781)
chr6 (290-341)||(5360165-5360217)
chr6 (308-344)||(11306158-11306194)
chr6 (290-341)||(12390476-12390528)
chr6 (308-344)||(17328248-17328284)
chr6 (324-356)||(28741970-28742002)
[»] chr2 (20 HSPs)
chr2 (290-348)||(19605940-19605998)
chr2 (246-356)||(28194178-28194294)
chr2 (291-356)||(8192447-8192512)
chr2 (290-354)||(30943134-30943198)
chr2 (290-347)||(19525491-19525548)
chr2 (290-341)||(30466924-30466976)
chr2 (322-356)||(6099517-6099551)
chr2 (322-356)||(26482136-26482170)
chr2 (308-342)||(29996444-29996478)
chr2 (290-342)||(3943790-3943843)
chr2 (308-345)||(13803550-13803587)
chr2 (290-355)||(26176292-26176357)
chr2 (308-341)||(33569842-33569875)
chr2 (309-341)||(9318060-9318092)
chr2 (308-344)||(9776360-9776396)
chr2 (291-339)||(10324948-10324996)
chr2 (290-341)||(10582084-10582136)
chr2 (304-356)||(16525221-16525273)
chr2 (290-341)||(17324817-17324869)
chr2 (290-346)||(36179922-36179978)
[»] chr7 (24 HSPs)
chr7 (294-356)||(3951089-3951151)
chr7 (290-356)||(23330834-23330900)
chr7 (290-356)||(28647009-28647075)
chr7 (308-345)||(13106766-13106803)
chr7 (308-345)||(17113850-17113887)
chr7 (290-341)||(11997904-11997956)
chr7 (290-341)||(21217927-21217979)
chr7 (304-356)||(22696360-22696412)
chr7 (304-342)||(22638346-22638384)
chr7 (290-342)||(654798-654851)
chr7 (290-342)||(2751325-2751378)
chr7 (308-345)||(21558183-21558220)
chr7 (308-345)||(26459394-26459431)
chr7 (308-345)||(43215239-43215276)
chr7 (290-346)||(1469162-1469218)
chr7 (290-341)||(7175956-7176008)
chr7 (290-341)||(7275332-7275384)
chr7 (288-348)||(11910047-11910107)
chr7 (290-341)||(17212108-17212160)
chr7 (290-341)||(22119943-22119995)
chr7 (290-341)||(29861725-29861777)
chr7 (290-346)||(36173085-36173141)
chr7 (290-341)||(40543004-40543056)
chr7 (290-341)||(41907607-41907659)
[»] chr5 (10 HSPs)
chr5 (290-348)||(19145506-19145564)
chr5 (322-356)||(16172982-16173016)
chr5 (290-356)||(36895461-36895527)
chr5 (294-348)||(40330677-40330731)
chr5 (319-356)||(8780514-8780551)
chr5 (308-345)||(14285216-14285253)
chr5 (308-341)||(16773866-16773899)
chr5 (324-356)||(15485420-15485452)
chr5 (290-341)||(27498825-27498877)
chr5 (290-341)||(38684259-38684311)
[»] chr1 (30 HSPs)
chr1 (290-347)||(25237084-25237141)
chr1 (290-356)||(1138615-1138681)
chr1 (290-348)||(32729589-32729647)
chr1 (290-341)||(7766821-7766873)
chr1 (290-341)||(8077698-8077750)
chr1 (290-341)||(9500449-9500501)
chr1 (290-341)||(15059496-15059548)
chr1 (290-342)||(19034481-19034533)
chr1 (290-341)||(23734167-23734219)
chr1 (290-341)||(23741359-23741411)
chr1 (304-356)||(39964548-39964600)
chr1 (290-341)||(7197341-7197392)
chr1 (290-356)||(24217014-24217080)
chr1 (290-347)||(1486463-1486520)
chr1 (308-345)||(2799917-2799954)
chr1 (290-343)||(16539657-16539710)
chr1 (304-341)||(18646904-18646941)
chr1 (304-341)||(27454975-27455012)
chr1 (308-345)||(29753704-29753741)
chr1 (308-345)||(33700757-33700794)
chr1 (308-345)||(36371525-36371562)
chr1 (309-338)||(43927568-43927597)
chr1 (290-342)||(46607860-46607913)
chr1 (290-341)||(4621331-4621383)
chr1 (354-390)||(6471690-6471726)
chr1 (290-338)||(16899557-16899605)
chr1 (290-341)||(24122074-24122126)
chr1 (290-341)||(24674444-24674496)
chr1 (308-344)||(40810523-40810559)
chr1 (290-341)||(45859137-45859189)
[»] scaffold0020 (1 HSPs)
scaffold0020 (246-348)||(123105-123204)
[»] chr4 (23 HSPs)
chr4 (246-357)||(13017764-13017870)
chr4 (290-357)||(24273257-24273324)
chr4 (308-346)||(10048034-10048072)
chr4 (300-356)||(29195138-29195194)
chr4 (290-341)||(34844852-34844904)
chr4 (290-341)||(40058946-40058998)
chr4 (290-341)||(49287909-49287961)
chr4 (304-355)||(3392774-3392825)
chr4 (290-340)||(5609296-5609347)
chr4 (290-341)||(22630281-22630332)
chr4 (322-356)||(37980146-37980180)
chr4 (357-391)||(39288883-39288917)
chr4 (322-356)||(56409994-56410028)
chr4 (304-341)||(19660641-19660678)
chr4 (290-342)||(25852264-25852317)
chr4 (290-334)||(32942428-32942473)
chr4 (308-345)||(37109335-37109372)
chr4 (308-345)||(37274443-37274480)
chr4 (290-341)||(9517735-9517787)
chr4 (360-392)||(12710195-12710227)
chr4 (290-341)||(27528889-27528941)
chr4 (290-341)||(33992677-33992729)
chr4 (290-341)||(43719159-43719211)
[»] scaffold0012 (1 HSPs)
scaffold0012 (357-390)||(240903-240936)
[»] chr8 (16 HSPs)
chr8 (291-356)||(33585723-33585788)
chr8 (290-347)||(6953101-6953159)
chr8 (291-357)||(18128552-18128618)
chr8 (290-348)||(26168943-26169001)
chr8 (308-357)||(33017256-33017306)
chr8 (290-356)||(34639302-34639367)
chr8 (290-348)||(36094732-36094790)
chr8 (315-356)||(1372521-1372562)
chr8 (290-342)||(3734717-3734770)
chr8 (308-345)||(18540353-18540390)
chr8 (290-346)||(3403597-3403653)
chr8 (290-341)||(4718700-4718752)
chr8 (290-341)||(15259500-15259552)
chr8 (308-344)||(31843845-31843881)
chr8 (290-341)||(34237749-34237801)
chr8 (290-341)||(39349311-39349363)
[»] chr3 (23 HSPs)
chr3 (308-345)||(8796077-8796114)
chr3 (304-356)||(40777056-40777108)
chr3 (290-357)||(30695344-30695411)
chr3 (314-356)||(39253740-39253783)
chr3 (290-336)||(1178228-1178274)
chr3 (304-342)||(7485634-7485672)
chr3 (290-356)||(26158854-26158920)
chr3 (290-339)||(53234004-53234054)
chr3 (306-356)||(53863850-53863900)
chr3 (308-341)||(10445123-10445156)
chr3 (304-341)||(24407312-24407349)
chr3 (308-356)||(28703388-28703437)
chr3 (290-342)||(51532839-51532892)
chr3 (290-341)||(8456244-8456296)
chr3 (304-356)||(11092150-11092202)
chr3 (304-348)||(15034396-15034440)
chr3 (290-341)||(26108343-26108395)
chr3 (290-341)||(30807247-30807299)
chr3 (304-356)||(31766727-31766779)
chr3 (324-356)||(34844414-34844446)
chr3 (290-341)||(35492962-35493014)
chr3 (304-348)||(40268540-40268584)
chr3 (360-392)||(50583008-50583040)
[»] scaffold0160 (1 HSPs)
scaffold0160 (290-357)||(29237-29304)
[»] scaffold0576 (1 HSPs)
scaffold0576 (290-342)||(5176-5229)
[»] scaffold0238 (1 HSPs)
scaffold0238 (308-345)||(2695-2732)
[»] scaffold0199 (1 HSPs)
scaffold0199 (296-341)||(8508-8553)
[»] scaffold0180 (1 HSPs)
scaffold0180 (308-345)||(19946-19983)
[»] scaffold0026 (1 HSPs)
scaffold0026 (290-342)||(97460-97513)
[»] scaffold0070 (1 HSPs)
scaffold0070 (290-341)||(40376-40428)
[»] scaffold0019 (1 HSPs)
scaffold0019 (290-341)||(161860-161912)


Alignment Details
Target: chr6 (Bit Score: 170; Significance: 4e-91; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 20 - 245
Target Start/End: Original strand, 17149222 - 17149446
Alignment:
Q  20 attgccaccaagaaagagtatttggatgctcttggatgtgacatgccaagtgtattagagacacgaacacttgcaaggcattagaatcaaatcatcaatc 119  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  17149222 attgtcaccaagaaagagtacttggatgctcttggatgtgacatgccaagtgtattagagacacgaacacttgcaaggcattagaatcaaatcatcaatg 17149321  T
Q  120 aataattagttgaagcattgagaaaaatatatggaaaactatataatcaaaatcaacatcctacaggatcttatttcattttaaattctaannnnnnnnc 219  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||             
T  17149322 aagaattagttgaagcattgagaaaaatatatggaaaactatataatcaaaatcaacatcctataagatcttatttcattttaaattctaatttttttt- 17149420  T
Q  220 agaataaaagtttagatgcctatgat 245  Q
    ||||||||||||||||||||||||||    
T  17149421 agaataaaagtttagatgcctatgat 17149446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 17166868 - 17166957
Alignment:
Q  20 attgccaccaagaaagagtatttggatgctcttggatgtgacatgccaagtgtattagagacacgaacacttgcaaggcattagaatcaa 109  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  17166868 attgccaccaagaaagagtatttggctgctcttggatgtgacatgccaagtgtattagagacacgaacacttgcaagacattagaatcaa 17166957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 20 - 179
Target Start/End: Original strand, 17135441 - 17135594
Alignment:
Q  20 attgccaccaagaaagagtatttggatgctcttggatgtgacatgccaagtgtattagagacacgaacacttgcaaggcattagaatcaaatcatcaatc 119  Q
    ||||| |||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||| |||||||        ||||||     
T  17135441 attgctaccaagaaagagtatttggatgctcttggatgcgacattccaagtgtatgagagacacgaacacttgcaagacattaga--------atcaata 17135532  T
Q  120 aataattagttgaagcattgagaaaaa--tatatggaaaactatataatcaaaatcaacatc 179  Q
     ||| | ||||  |||||||| |||||  |||||||||||||||||||||||||||||||||    
T  17135533 tatagtcagtttgagcattgaaaaaaaattatatggaaaactatataatcaaaatcaacatc 17135594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 282 - 413
Target Start/End: Original strand, 17149542 - 17149658
Alignment:
Q  282 caaggctc-gtatggacttgccaaccgaaattagcatcagagagaatcgaacctgagaccttgagaggggcacactttgagaggagcatactccaagatc 380  Q
    |||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||                |||||||||||| |||||||||||    
T  17149542 caaggctctgtatggacttgccaaccgaaattagcaccagagggaatcgaacctgagacc----------------ttgagaggagcacactccaagatc 17149625  T
Q  381 ccaaaccaaccaaatgagttttagatgcctatg 413  Q
    |||||||||||||||||||||||||||||||||    
T  17149626 ccaaaccaaccaaatgagttttagatgcctatg 17149658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 282 - 348
Target Start/End: Complemental strand, 9208363 - 9208296
Alignment:
Q  282 caaggctc-gtatggacttgccaaccgaaattagcatcagagagaatcgaacctgagaccttgagagg 348  Q
    |||||||| ||||||||||||| ||||||||| ||| ||| | |||||||||||||||||||||||||    
T  9208363 caaggctctgtatggacttgcccaccgaaattggcaccagggggaatcgaacctgagaccttgagagg 9208296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 304 - 356
Target Start/End: Original strand, 6691531 - 6691583
Alignment:
Q  304 accgaaattagcatcagagagaatcgaacctgagaccttgagaggggcacact 356  Q
    ||||||||| ||| | ||||||||||||||||||||||||||||| |||||||    
T  6691531 accgaaattggcaccggagagaatcgaacctgagaccttgagaggagcacact 6691583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 356
Target Start/End: Complemental strand, 9583461 - 9583409
Alignment:
Q  304 accgaaattagcatcagagagaatcgaacctgagaccttgagaggggcacact 356  Q
    ||||||||| ||| |||||||||||||||  |||||||||||||| |||||||    
T  9583461 accgaaattggcaccagagagaatcgaactggagaccttgagaggagcacact 9583409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 341
Target Start/End: Complemental strand, 11448974 - 11448922
Alignment:
Q  290 gtatggactt-gccaaccgaaattagcatcagagagaatcgaacctgagacct 341  Q
    |||||||||| ||| ||||||||| ||| ||||||||||||||||||||||||    
T  11448974 gtatggacttagcccaccgaaattggcaccagagagaatcgaacctgagacct 11448922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 344
Target Start/End: Complemental strand, 10377817 - 10377763
Alignment:
Q  290 gtatggacttgccaaccgaaattagcatcagagagaatcgaacctgagaccttga 344  Q
    ||||||||||||| ||||||||| ||| || || |||| ||||||||||||||||    
T  10377817 gtatggacttgcccaccgaaattggcaccatagggaattgaacctgagaccttga 10377763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 348
Target Start/End: Complemental strand, 28028623 - 28028581
Alignment:
Q  306 cgaaattagcatcagagagaatcgaacctgagaccttgagagg 348  Q
    ||||||| ||||||| ||||||||||| |||||||||||||||    
T  28028623 cgaaattggcatcagggagaatcgaacatgagaccttgagagg 28028581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 342
Target Start/End: Original strand, 15360192 - 15360245
Alignment:
Q  290 gtatggactt-gccaaccgaaattagcatcagagagaatcgaacctgagacctt 342  Q
    |||||||||| ||| ||||||||| ||| ||||| |||||||||||||||||||    
T  15360192 gtatggacttagcccaccgaaattggcaccagagggaatcgaacctgagacctt 15360245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 341
Target Start/End: Original strand, 654240 - 654292
Alignment:
Q  290 gtatggactt-gccaaccgaaattagcatcagagagaatcgaacctgagacct 341  Q
    |||||||||| ||| ||||||||| ||| ||||| ||||||||||||||||||    
T  654240 gtatggacttagcccaccgaaattggcaccagagggaatcgaacctgagacct 654292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 341
Target Start/End: Original strand, 3222729 - 3222781
Alignment:
Q  290 gtatggactt-gccaaccgaaattagcatcagagagaatcgaacctgagacct 341  Q
    |||||||||| ||| ||||||||| ||| ||||| ||||||||||||||||||    
T  3222729 gtatggacttagcccaccgaaattggcaccagagggaatcgaacctgagacct 3222781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 341
Target Start/End: Original strand, 5360165 - 5360217
Alignment:
Q  290 gtatggactt-gccaaccgaaattagcatcagagagaatcgaacctgagacct 341  Q
    |||||||||| ||| ||||||||| |||| |||| ||||||||||||||||||    
T  5360165 gtatggacttagcccaccgaaattggcattagagggaatcgaacctgagacct 5360217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 344
Target Start/End: Original strand, 11306158 - 11306194
Alignment:
Q  308 aaattagcatcagagagaatcgaacctgagaccttga 344  Q
    ||||| ||| |||||||||||||||||||||||||||    
T  11306158 aaattggcaccagagagaatcgaacctgagaccttga 11306194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 341
Target Start/End: Complemental strand, 12390528 - 12390476
Alignment:
Q  290 gtatggactt-gccaaccgaaattagcatcagagagaatcgaacctgagacct 341  Q
    |||||||||| ||| ||||||||| ||| ||||| ||||||||||||||||||    
T  12390528 gtatggacttagcccaccgaaattggcaccagagggaatcgaacctgagacct 12390476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 344
Target Start/End: Original strand, 17328248 - 17328284
Alignment:
Q  308 aaattagcatcagagagaatcgaacctgagaccttga 344  Q
    |||||| |||||||||||||||||||||| |||||||    
T  17328248 aaattaacatcagagagaatcgaacctgaaaccttga 17328284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 356
Target Start/End: Original strand, 28741970 - 28742002
Alignment:
Q  324 gaatcgaacctgagaccttgagaggggcacact 356  Q
    ||||||||||||||||||||||||| |||||||    
T  28741970 gaatcgaacctgagaccttgagaggagcacact 28742002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 290 - 348
Target Start/End: Original strand, 19605940 - 19605998
Alignment:
Q  290 gtatggacttgccaaccgaaattagcatcagagagaatcgaacctgagaccttgagagg 348  Q
    ||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||    
T  19605940 gtatggacttgcccaccgaaattagcattagagggaatcgaacctgagaccttgagagg 19605998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 246 - 356
Target Start/End: Original strand, 28194178 - 28194294
Alignment:
Q  246 gaccaatcccaccacccacttgtggggggcccgttccaag-----gctc-gtatggacttgccaaccgaaattagcatcagagagaatcgaacctgagac 339  Q
    ||||||||||||| || ||||| ||||| ||||||| |||     |||| ||||||||||||| ||||||||| ||| ||||||||||||||||| ||||    
T  28194178 gaccaatcccaccgcctacttgcgggggccccgttctaagcttttgctctgtatggacttgcccaccgaaattggcaccagagagaatcgaacctaagac 28194277  T
Q  340 cttgagaggggcacact 356  Q
    ||| ||||| |||||||    
T  28194278 cttaagaggagcacact 28194294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 291 - 356
Target Start/End: Original strand, 8192447 - 8192512
Alignment:
Q  291 tatggacttgccaaccgaaattagcatcagagagaatcgaacctgagaccttgagaggggcacact 356  Q
    |||||||||||| ||||| ||| ||| ||||| ||||||||||||||||||||||||| |||||||    
T  8192447 tatggacttgcccaccgacattggcaccagagggaatcgaacctgagaccttgagaggagcacact 8192512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 290 - 354
Target Start/End: Complemental strand, 30943198 - 30943134
Alignment:
Q  290 gtatggacttgccaaccgaaattagcatcagagagaatcgaacctgagaccttgagaggggcaca 354  Q
    ||||||||| ||| ||||||||| |||| |||||||||| ||| ||||||||||||||| |||||    
T  30943198 gtatggactagcccaccgaaattggcataagagagaatcaaacttgagaccttgagaggagcaca 30943134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 290 - 347
Target Start/End: Original strand, 19525491 - 19525548
Alignment:
Q  290 gtatggacttgccaaccgaaattagcatcagagagaatcgaacctgagaccttgagag 347  Q
    ||||||||||||| ||| ||||| ||| ||||| ||||||||||||||| ||||||||    
T  19525491 gtatggacttgcccaccaaaattggcaccagagggaatcgaacctgagatcttgagag 19525548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 341
Target Start/End: Original strand, 30466924 - 30466976
Alignment:
Q  290 gtatggactt-gccaaccgaaattagcatcagagagaatcgaacctgagacct 341  Q
    |||||||||| ||| ||||||||| ||| ||||||||||||||||||||||||    
T  30466924 gtatggacttagcccaccgaaattggcagcagagagaatcgaacctgagacct 30466976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 356
Target Start/End: Original strand, 6099517 - 6099551
Alignment:
Q  322 gagaatcgaacctgagaccttgagaggggcacact 356  Q
    ||||||||||||||||||||||||||| |||||||    
T  6099517 gagaatcgaacctgagaccttgagaggagcacact 6099551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 356
Target Start/End: Complemental strand, 26482170 - 26482136
Alignment:
Q  322 gagaatcgaacctgagaccttgagaggggcacact 356  Q
    ||||||||||||||||||||||||||| |||||||    
T  26482170 gagaatcgaacctgagaccttgagaggagcacact 26482136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 342
Target Start/End: Original strand, 29996444 - 29996478
Alignment:
Q  308 aaattagcatcagagagaatcgaacctgagacctt 342  Q
    ||||||||||| |||||||||||||||||||||||    
T  29996444 aaattagcatccgagagaatcgaacctgagacctt 29996478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 342
Target Start/End: Complemental strand, 3943843 - 3943790
Alignment:
Q  290 gtatggactt-gccaaccgaaattagcatcagagagaatcgaacctgagacctt 342  Q
    |||||||||| ||||||||||||| ||| |||||| ||||||| ||||||||||    
T  3943843 gtatggacttagccaaccgaaattggcaccagagaaaatcgaatctgagacctt 3943790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Complemental strand, 13803587 - 13803550
Alignment:
Q  308 aaattagcatcagagagaatcgaacctgagaccttgag 345  Q
    ||||| |||||||||| |||||||||||||||||||||    
T  13803587 aaattggcatcagagataatcgaacctgagaccttgag 13803550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 355
Target Start/End: Original strand, 26176292 - 26176357
Alignment:
Q  290 gtatggacttgccaaccgaaattagcatcagagagaatcgaacctgagaccttgagaggggcacac 355  Q
    ||||||||| | | ||| ||||| ||| ||| |||||||||| |||||||||||||||| ||||||    
T  26176292 gtatggactaggccaccaaaattggcaccagggagaatcgaatctgagaccttgagaggagcacac 26176357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 341
Target Start/End: Original strand, 33569842 - 33569875
Alignment:
Q  308 aaattagcatcagagagaatcgaacctgagacct 341  Q
    ||||||||| ||||||||||||||||||||||||    
T  33569842 aaattagcaccagagagaatcgaacctgagacct 33569875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 341
Target Start/End: Original strand, 9318060 - 9318092
Alignment:
Q  309 aattagcatcagagagaatcgaacctgagacct 341  Q
    |||| ||||||||||||||||||||||||||||    
T  9318060 aattggcatcagagagaatcgaacctgagacct 9318092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 344
Target Start/End: Complemental strand, 9776396 - 9776360
Alignment:
Q  308 aaattagcatcagagagaatcgaacctgagaccttga 344  Q
    |||||||||||||||| |||||||||||||| |||||    
T  9776396 aaattagcatcagagataatcgaacctgagatcttga 9776360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 339
Target Start/End: Complemental strand, 10324996 - 10324948
Alignment:
Q  291 tatggacttgccaaccgaaattagcatcagagagaatcgaacctgagac 339  Q
    |||| ||||||| |||||||||| ||| |||| ||||||||||||||||    
T  10324996 tatgaacttgcccaccgaaattaacataagagggaatcgaacctgagac 10324948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 341
Target Start/End: Original strand, 10582084 - 10582136
Alignment:
Q  290 gtatggactt-gccaaccgaaattagcatcagagagaatcgaacctgagacct 341  Q
    |||||||||| ||| ||||||||| ||| ||||| ||||||||||||||||||    
T  10582084 gtatggacttagcccaccgaaattggcaccagagggaatcgaacctgagacct 10582136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 356
Target Start/End: Complemental strand, 16525273 - 16525221
Alignment:
Q  304 accgaaattagcatcagagagaatcgaacctgagaccttgagaggggcacact 356  Q
    ||||||||| ||| | | ||||||||||||||||||||||||||  |||||||    
T  16525273 accgaaattggcaccggggagaatcgaacctgagaccttgagagtcgcacact 16525221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 341
Target Start/End: Complemental strand, 17324869 - 17324817
Alignment:
Q  290 gtatggactt-gccaaccgaaattagcatcagagagaatcgaacctgagacct 341  Q
    |||||||||| ||| ||||||||| ||| ||||| ||||||||||||||||||    
T  17324869 gtatggacttagcccaccgaaattggcaccagagggaatcgaacctgagacct 17324817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 346
Target Start/End: Complemental strand, 36179978 - 36179922
Alignment:
Q  290 gtatggacttgccaaccgaaattagcatcagagagaatcgaacctgagaccttgaga 346  Q
    ||||||||||||| | |||||||  |||||| ||||||||||| |||||||| ||||    
T  36179978 gtatggacttgcctatcgaaattgacatcagggagaatcgaacatgagacctcgaga 36179922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 294 - 356
Target Start/End: Original strand, 3951089 - 3951151
Alignment:
Q  294 ggacttgccaaccgaaattagcatcagagagaatcgaacctgagaccttgagaggggcacact 356  Q
    ||||||||| |||||||||||||||||||| || |||||| ||||| |||||||| |||||||    
T  3951089 ggacttgcccaccgaaattagcatcagagaaaagcgaacccgagactttgagaggagcacact 3951151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 290 - 356
Target Start/End: Original strand, 23330834 - 23330900
Alignment:
Q  290 gtatggacttgccaaccgaaattagcatcagagagaatcgaacctgagaccttgagaggggcacact 356  Q
    ||||||||||||| ||||||||| ||| | ||| || |||||||||||||||||||||| |||||||    
T  23330834 gtatggacttgcccaccgaaattggcaccggagggagtcgaacctgagaccttgagaggagcacact 23330900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 290 - 356
Target Start/End: Complemental strand, 28647075 - 28647009
Alignment:
Q  290 gtatggacttgccaaccgaaattagcatcagagagaatcgaacctgagaccttgagaggggcacact 356  Q
    |||| |||||||| ||||||||| ||| ||||| ||||||||||||||||||||||||  |||||||    
T  28647075 gtattgacttgcccaccgaaattggcaccagagggaatcgaacctgagaccttgagagaagcacact 28647009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 13106766 - 13106803
Alignment:
Q  308 aaattagcatcagagagaatcgaacctgagaccttgag 345  Q
    ||||||||||||||||||||||||||||||||||||||    
T  13106766 aaattagcatcagagagaatcgaacctgagaccttgag 13106803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 308 - 345
Target Start/End: Complemental strand, 17113887 - 17113850
Alignment:
Q  308 aaattagcatcagagagaatcgaacctgagaccttgag 345  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  17113887 aaattagcatcagagagaatcgaacttgagaccttgag 17113850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 341
Target Start/End: Complemental strand, 11997956 - 11997904
Alignment:
Q  290 gtatggactt-gccaaccgaaattagcatcagagagaatcgaacctgagacct 341  Q
    |||||||||| ||||||||||||| ||| ||||| ||||||||||||||||||    
T  11997956 gtatggacttagccaaccgaaattggcaccagagggaatcgaacctgagacct 11997904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 341
Target Start/End: Original strand, 21217927 - 21217979
Alignment:
Q  290 gtatggactt-gccaaccgaaattagcatcagagagaatcgaacctgagacct 341  Q
    |||||||||| ||| ||||||||| ||||||||| ||||||||||||||||||    
T  21217927 gtatggacttagcccaccgaaattggcatcagagggaatcgaacctgagacct 21217979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 356
Target Start/End: Complemental strand, 22696412 - 22696360
Alignment:
Q  304 accgaaattagcatcagagagaatcgaacctgagaccttgagaggggcacact 356  Q
    ||||||||| ||| ||||| ||||| ||||||||||||||||||| |||||||    
T  22696412 accgaaattggcaccagagggaatcaaacctgagaccttgagaggagcacact 22696360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 342
Target Start/End: Complemental strand, 22638384 - 22638346
Alignment:
Q  304 accgaaattagcatcagagagaatcgaacctgagacctt 342  Q
    ||||||||||||| ||||| |||||||||||||||||||    
T  22638384 accgaaattagcaccagagggaatcgaacctgagacctt 22638346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 342
Target Start/End: Original strand, 654798 - 654851
Alignment:
Q  290 gtatggactt-gccaaccgaaattagcatcagagagaatcgaacctgagacctt 342  Q
    |||||||||| ||| ||||||||| ||| ||||| |||||||||||||||||||    
T  654798 gtatggacttagcccaccgaaattggcaccagagggaatcgaacctgagacctt 654851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 342
Target Start/End: Complemental strand, 2751378 - 2751325
Alignment:
Q  290 gtatggactt-gccaaccgaaattagcatcagagagaatcgaacctgagacctt 342  Q
    |||||||||| ||| ||||||||| ||| ||||| |||||||||||||||||||    
T  2751378 gtatggacttagcccaccgaaattggcaccagagggaatcgaacctgagacctt 2751325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Complemental strand, 21558220 - 21558183
Alignment:
Q  308 aaattagcatcagagagaatcgaacctgagaccttgag 345  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  21558220 aaattggcaccagagagaatcgaacctgagaccttgag 21558183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 26459394 - 26459431
Alignment:
Q  308 aaattagcatcagagagaatcgaacctgagaccttgag 345  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  26459394 aaattggcaccagagagaatcgaacctgagaccttgag 26459431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Complemental strand, 43215276 - 43215239
Alignment:
Q  308 aaattagcatcagagagaatcgaacctgagaccttgag 345  Q
    ||||| |||| |||||||||||||||||||||||||||    
T  43215276 aaattggcataagagagaatcgaacctgagaccttgag 43215239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 346
Target Start/End: Complemental strand, 1469218 - 1469162
Alignment:
Q  290 gtatggacttgccaaccgaaattagcatcagagagaatcgaacctgagaccttgaga 346  Q
    ||||||||||||| | ||||||| |||| | ||  ||||||||||||||||||||||    
T  1469218 gtatggacttgcccatcgaaattggcattaaaggaaatcgaacctgagaccttgaga 1469162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 341
Target Start/End: Original strand, 7175956 - 7176008
Alignment:
Q  290 gtatggactt-gccaaccgaaattagcatcagagagaatcgaacctgagacct 341  Q
    |||||||||| ||| ||||||||| ||| ||||| ||||||||||||||||||    
T  7175956 gtatggacttagcccaccgaaattggcaccagagggaatcgaacctgagacct 7176008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 341
Target Start/End: Complemental strand, 7275384 - 7275332
Alignment:
Q  290 gtatggactt-gccaaccgaaattagcatcagagagaatcgaacctgagacct 341  Q
    |||||||||| ||| ||||||||| ||| ||||| ||||||||||||||||||    
T  7275384 gtatggacttagcccaccgaaattggcaccagagggaatcgaacctgagacct 7275332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 348
Target Start/End: Original strand, 11910047 - 11910107
Alignment:
Q  288 tcgtatggacttgccaaccgaaattagcatcagagagaatcgaacctgagaccttgagagg 348  Q
    ||||||||||||| | ||| |||||  || |||||| ||| ||||||||||||||||||||    
T  11910047 tcgtatggacttgaccaccaaaattgacaccagagaaaattgaacctgagaccttgagagg 11910107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 341
Target Start/End: Complemental strand, 17212160 - 17212108
Alignment:
Q  290 gtatggactt-gccaaccgaaattagcatcagagagaatcgaacctgagacct 341  Q
    |||||||||| ||| ||||||||| ||| |||||||||| |||||||||||||    
T  17212160 gtatggacttagcccaccgaaattggcaccagagagaattgaacctgagacct 17212108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 341
Target Start/End: Complemental strand, 22119995 - 22119943
Alignment:
Q  290 gtatggactt-gccaaccgaaattagcatcagagagaatcgaacctgagacct 341  Q
    |||||||||| ||| ||||||||| ||| ||||| ||||||||||||||||||    
T  22119995 gtatggacttagcccaccgaaattggcaccagagggaatcgaacctgagacct 22119943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 341
Target Start/End: Complemental strand, 29861777 - 29861725
Alignment:
Q  290 gtatggactt-gccaaccgaaattagcatcagagagaatcgaacctgagacct 341  Q
    |||||||||| ||| ||||||||| ||| ||||| ||||||||||||||||||    
T  29861777 gtatggacttagcccaccgaaattggcaccagagggaatcgaacctgagacct 29861725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 346
Target Start/End: Complemental strand, 36173141 - 36173085
Alignment:
Q  290 gtatggacttgccaaccgaaattagcatcagagagaatcgaacctgagaccttgaga 346  Q
    ||||||||||||| ||| ||||| |||  |||| ||||||||||||| |||||||||    
T  36173141 gtatggacttgcccaccaaaattggcacaagagggaatcgaacctgaaaccttgaga 36173085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 341
Target Start/End: Original strand, 40543004 - 40543056
Alignment:
Q  290 gtatggactt-gccaaccgaaattagcatcagagagaatcgaacctgagacct 341  Q
    |||||||||| ||| ||||||||| ||| ||||| ||||||||||||||||||    
T  40543004 gtatggacttagcccaccgaaattggcaccagagggaatcgaacctgagacct 40543056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 341
Target Start/End: Original strand, 41907607 - 41907659
Alignment:
Q  290 gtatggactt-gccaaccgaaattagcatcagagagaatcgaacctgagacct 341  Q
    |||||||||| ||| || |||||| ||| ||||||||||||||||||||||||    
T  41907607 gtatggacttagcccactgaaattggcaccagagagaatcgaacctgagacct 41907659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 290 - 348
Target Start/End: Original strand, 19145506 - 19145564
Alignment:
Q  290 gtatggacttgccaaccgaaattagcatcagagagaatcgaacctgagaccttgagagg 348  Q
    ||||||||||||| ||||||||| ||| ||||| |||||||||| ||||||||||||||    
T  19145506 gtatggacttgcccaccgaaattggcaccagagggaatcgaaccggagaccttgagagg 19145564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 356
Target Start/End: Original strand, 16172982 - 16173016
Alignment:
Q  322 gagaatcgaacctgagaccttgagaggggcacact 356  Q
    ||||||||||||||||||||||||||| |||||||    
T  16172982 gagaatcgaacctgagaccttgagaggagcacact 16173016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 356
Target Start/End: Complemental strand, 36895527 - 36895461
Alignment:
Q  290 gtatggacttgccaaccgaaattagcatcagagagaatcgaacctgagaccttgagaggggcacact 356  Q
    ||||||||||| | ||||||||| | | ||||| ||||||||| ||| ||||||||||| |||||||    
T  36895527 gtatggacttgaccaccgaaattggtaccagagggaatcgaacatgaaaccttgagaggagcacact 36895461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 348
Target Start/End: Complemental strand, 40330731 - 40330677
Alignment:
Q  294 ggacttgccaaccgaaattagcatcagagagaatcgaacctgagaccttgagagg 348  Q
    ||||||||| | ||||||||||| || ||||||| |||| |||||||||||||||    
T  40330731 ggacttgcccaacgaaattagcaccatagagaattgaacttgagaccttgagagg 40330677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 356
Target Start/End: Complemental strand, 8780551 - 8780514
Alignment:
Q  319 agagagaatcgaacctgagaccttgagaggggcacact 356  Q
    ||||| |||||||||||||||||||||||| |||||||    
T  8780551 agagacaatcgaacctgagaccttgagaggagcacact 8780514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Complemental strand, 14285253 - 14285216
Alignment:
Q  308 aaattagcatcagagagaatcgaacctgagaccttgag 345  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  14285253 aaattggcaccagagagaatcgaacctgagaccttgag 14285216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 341
Target Start/End: Complemental strand, 16773899 - 16773866
Alignment:
Q  308 aaattagcatcagagagaatcgaacctgagacct 341  Q
    ||||| ||||||||||||||||||||||||||||    
T  16773899 aaattggcatcagagagaatcgaacctgagacct 16773866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 356
Target Start/End: Original strand, 15485420 - 15485452
Alignment:
Q  324 gaatcgaacctgagaccttgagaggggcacact 356  Q
    ||||||||||||||||||||||||| |||||||    
T  15485420 gaatcgaacctgagaccttgagaggagcacact 15485452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 341
Target Start/End: Original strand, 27498825 - 27498877
Alignment:
Q  290 gtatggactt-gccaaccgaaattagcatcagagagaatcgaacctgagacct 341  Q
    |||||||||| ||| ||||||||| ||| ||||| ||||||||||||||||||    
T  27498825 gtatggacttagcccaccgaaattggcaccagagggaatcgaacctgagacct 27498877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 341
Target Start/End: Complemental strand, 38684311 - 38684259
Alignment:
Q  290 gtatggactt-gccaaccgaaattagcatcagagagaatcgaacctgagacct 341  Q
    |||||||||| ||| ||||||||| ||| ||||| ||||||||||||||||||    
T  38684311 gtatggacttagcccaccgaaattggcaccagagggaatcgaacctgagacct 38684259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 290 - 347
Target Start/End: Original strand, 25237084 - 25237141
Alignment:
Q  290 gtatggacttgccaaccgaaattagcatcagagagaatcgaacctgagaccttgagag 347  Q
    ||||||||||||| ||||||||| |||  |||| ||||||||||||||||||||||||    
T  25237084 gtatggacttgcccaccgaaattggcactagagggaatcgaacctgagaccttgagag 25237141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 356
Target Start/End: Complemental strand, 1138681 - 1138615
Alignment:
Q  290 gtatggacttgccaaccgaaattagcatcagagagaatcgaacctgagaccttgagaggggcacact 356  Q
    ||||||||||| | ||||||||| |||  ||||||| |||||||| ||||||||||||| |||||||    
T  1138681 gtatggacttgtccaccgaaattggcactagagagattcgaacctaagaccttgagaggagcacact 1138615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 348
Target Start/End: Complemental strand, 32729647 - 32729589
Alignment:
Q  290 gtatggacttgccaaccgaaattagcatcagagagaatcgaacctgagaccttgagagg 348  Q
    ||||||||||||| ||||||||| ||| || || |||||||||||||||| ||||||||    
T  32729647 gtatggacttgcccaccgaaattggcaccatagggaatcgaacctgagactttgagagg 32729589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 341
Target Start/End: Original strand, 7766821 - 7766873
Alignment:
Q  290 gtatggactt-gccaaccgaaattagcatcagagagaatcgaacctgagacct 341  Q
    |||||||||| ||| ||||||||||||| ||||| ||||||||||||||||||    
T  7766821 gtatggacttagcccaccgaaattagcaccagagggaatcgaacctgagacct 7766873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 341
Target Start/End: Complemental strand, 8077750 - 8077698
Alignment:
Q  290 gtatggactt-gccaaccgaaattagcatcagagagaatcgaacctgagacct 341  Q
    |||||||||| ||| ||||||||| ||| ||||||||||||||||||||||||    
T  8077750 gtatggacttagcccaccgaaattggcaccagagagaatcgaacctgagacct 8077698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 341
Target Start/End: Original strand, 9500449 - 9500501
Alignment:
Q  290 gtatggactt-gccaaccgaaattagcatcagagagaatcgaacctgagacct 341  Q
    |||||||||| ||| ||||||||| ||| ||||||||||||||||||||||||    
T  9500449 gtatggacttagcccaccgaaattggcaccagagagaatcgaacctgagacct 9500501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 341
Target Start/End: Original strand, 15059496 - 15059548
Alignment:
Q  290 gtatggactt-gccaaccgaaattagcatcagagagaatcgaacctgagacct 341  Q
    |||||||||| ||| ||||||||| ||| ||||||||||||||||||||||||    
T  15059496 gtatggacttagcccaccgaaattggcaccagagagaatcgaacctgagacct 15059548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 342
Target Start/End: Original strand, 19034481 - 19034533
Alignment:
Q  290 gtatggacttgccaaccgaaattagcatcagagagaatcgaacctgagacctt 342  Q
    ||||||||||||| ||||||||| ||| |||||| |||||||||||| |||||    
T  19034481 gtatggacttgcccaccgaaattggcaccagagataatcgaacctgaaacctt 19034533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 341
Target Start/End: Complemental strand, 23734219 - 23734167
Alignment:
Q  290 gtatggactt-gccaaccgaaattagcatcagagagaatcgaacctgagacct 341  Q
    |||||||||| ||| ||||||||| ||||||||| ||||||||||||||||||    
T  23734219 gtatggacttagcccaccgaaattggcatcagagggaatcgaacctgagacct 23734167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 341
Target Start/End: Complemental strand, 23741411 - 23741359
Alignment:
Q  290 gtatggactt-gccaaccgaaattagcatcagagagaatcgaacctgagacct 341  Q
    |||||||||| ||| ||||||||| ||||||||| ||||||||||||||||||    
T  23741411 gtatggacttagcccaccgaaattggcatcagagggaatcgaacctgagacct 23741359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 356
Target Start/End: Complemental strand, 39964600 - 39964548
Alignment:
Q  304 accgaaattagcatcagagagaatcgaacctgagaccttgagaggggcacact 356  Q
    ||||||||| ||| ||||| ||||| ||||||||||||||||||| |||||||    
T  39964600 accgaaattggcaccagagggaatcaaacctgagaccttgagaggagcacact 39964548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 290 - 341
Target Start/End: Original strand, 7197341 - 7197392
Alignment:
Q  290 gtatggacttgccaaccgaaattagcatcagagagaatcgaacctgagacct 341  Q
    |||| ||||| || ||||||||| ||||||||| ||||||||||||||||||    
T  7197341 gtattgacttacccaccgaaattggcatcagagggaatcgaacctgagacct 7197392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 356
Target Start/End: Complemental strand, 24217080 - 24217014
Alignment:
Q  290 gtatggacttgccaaccgaaattagcatcagagagaatcgaacctgagaccttgagaggggcacact 356  Q
    ||||||| || || ||||||||| ||| || ||  |||||||||||||||||||||||| |||||||    
T  24217080 gtatggatttacccaccgaaattggcaccaaaggtaatcgaacctgagaccttgagaggagcacact 24217014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 347
Target Start/End: Complemental strand, 1486520 - 1486463
Alignment:
Q  290 gtatggacttgccaaccgaaattagcatcagagagaatcgaacctgagaccttgagag 347  Q
    |||||||||| || | ||||||| ||| || || ||||||||||||||||||||||||    
T  1486520 gtatggacttacccatcgaaattggcaccaaagggaatcgaacctgagaccttgagag 1486463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Complemental strand, 2799954 - 2799917
Alignment:
Q  308 aaattagcatcagagagaatcgaacctgagaccttgag 345  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  2799954 aaattggcaccagagagaatcgaacctgagaccttgag 2799917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 343
Target Start/End: Complemental strand, 16539710 - 16539657
Alignment:
Q  290 gtatggacttgccaaccgaaattagcatcagagagaatcgaacctgagaccttg 343  Q
    ||||||||||||| ||| ||||| ||| ||||| ||||| ||||||||||||||    
T  16539710 gtatggacttgcccaccaaaattggcaccagagggaatcaaacctgagaccttg 16539657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 341
Target Start/End: Complemental strand, 18646941 - 18646904
Alignment:
Q  304 accgaaattagcatcagagagaatcgaacctgagacct 341  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  18646941 accgaaattggcaccagagagaatcgaacctgagacct 18646904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 341
Target Start/End: Original strand, 27454975 - 27455012
Alignment:
Q  304 accgaaattagcatcagagagaatcgaacctgagacct 341  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  27454975 accgaaattggcatcagagtgaatcgaacctgagacct 27455012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Complemental strand, 29753741 - 29753704
Alignment:
Q  308 aaattagcatcagagagaatcgaacctgagaccttgag 345  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  29753741 aaattggcaccagagagaatcgaacctgagaccttgag 29753704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 33700757 - 33700794
Alignment:
Q  308 aaattagcatcagagagaatcgaacctgagaccttgag 345  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  33700757 aaattggcaccagagagaatcgaacctgagaccttgag 33700794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Complemental strand, 36371562 - 36371525
Alignment:
Q  308 aaattagcatcagagagaatcgaacctgagaccttgag 345  Q
    ||||| ||||||||||||||||||||| ||||||||||    
T  36371562 aaattggcatcagagagaatcgaacctcagaccttgag 36371525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 338
Target Start/End: Original strand, 43927568 - 43927597
Alignment:
Q  309 aattagcatcagagagaatcgaacctgaga 338  Q
    ||||||||||||||||||||||||||||||    
T  43927568 aattagcatcagagagaatcgaacctgaga 43927597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 342
Target Start/End: Complemental strand, 46607913 - 46607860
Alignment:
Q  290 gtatggactt-gccaaccgaaattagcatcagagagaatcgaacctgagacctt 342  Q
    |||||||||| ||| ||||||||| ||| ||||| |||||||||||||||||||    
T  46607913 gtatggacttagcccaccgaaattggcaccagagggaatcgaacctgagacctt 46607860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 341
Target Start/End: Original strand, 4621331 - 4621383
Alignment:
Q  290 gtatggactt-gccaaccgaaattagcatcagagagaatcgaacctgagacct 341  Q
    |||||||||| ||| ||||||||| ||| ||||| ||||||||||||||||||    
T  4621331 gtatggacttagcccaccgaaattggcaccagagggaatcgaacctgagacct 4621383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 390
Target Start/End: Complemental strand, 6471726 - 6471690
Alignment:
Q  354 actttgagaggagcatactccaagatcccaaaccaac 390  Q
    |||||||||| |||||||||||||||| |||||||||    
T  6471726 actttgagagaagcatactccaagatctcaaaccaac 6471690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 338
Target Start/End: Complemental strand, 16899605 - 16899557
Alignment:
Q  290 gtatggacttgccaaccgaaattagcatcagagagaatcgaacctgaga 338  Q
    ||||||||| ||| ||||||||| ||| ||||| |||||||||||||||    
T  16899605 gtatggactggcccaccgaaattggcaccagagggaatcgaacctgaga 16899557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 341
Target Start/End: Complemental strand, 24122126 - 24122074
Alignment:
Q  290 gtatggactt-gccaaccgaaattagcatcagagagaatcgaacctgagacct 341  Q
    |||||||||| ||| ||||||||| ||| ||||| ||||||||||||||||||    
T  24122126 gtatggacttagcccaccgaaattggcaccagagggaatcgaacctgagacct 24122074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 341
Target Start/End: Complemental strand, 24674496 - 24674444
Alignment:
Q  290 gtatggactt-gccaaccgaaattagcatcagagagaatcgaacctgagacct 341  Q
    |||||||||| ||| ||||||||| ||| ||||| ||||||||||||||||||    
T  24674496 gtatggacttagcccaccgaaattggcaccagagggaatcgaacctgagacct 24674444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 344
Target Start/End: Complemental strand, 40810559 - 40810523
Alignment:
Q  308 aaattagcatcagagagaatcgaacctgagaccttga 344  Q
    ||||| ||| |||||||||||||||||||||||||||    
T  40810559 aaattggcaccagagagaatcgaacctgagaccttga 40810523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 341
Target Start/End: Original strand, 45859137 - 45859189
Alignment:
Q  290 gtatggactt-gccaaccgaaattagcatcagagagaatcgaacctgagacct 341  Q
    |||||||||| ||| ||||||||| ||| ||||| ||||||||||||||||||    
T  45859137 gtatggacttagcccaccgaaattggcaccagagggaatcgaacctgagacct 45859189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 246 - 348
Target Start/End: Original strand, 123105 - 123204
Alignment:
Q  246 gaccaatcccaccacccacttgtggggggcccgttccaaggctcgtatggacttgccaaccgaaattagcatcagagagaatcgaacctgagaccttgag 345  Q
    ||||||||||||||| |||||||||||  || |||| ||| |  ||||||||||||| ||||||||| ||| ||||| ||||||||| ||||| || |||    
T  123105 gaccaatcccaccacacacttgtggggc-cctgttctaagcc--gtatggacttgcccaccgaaattggcaacagagggaatcgaacatgagatctagag 123201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 246 - 357
Target Start/End: Complemental strand, 13017870 - 13017764
Alignment:
Q  246 gaccaatcccaccacccacttgtggggggcccgttccaaggctcgtatggacttgccaaccgaaattagcatcagagagaatcgaacctgagaccttgag 345  Q
    ||||||||||||  |||||||| ||||| ||||||| ||     ||||| ||||||| ||| ||||| ||| ||||| |||| |||||||||||||||||    
T  13017870 gaccaatcccactgcccacttgcgggggtcccgttctaa-----gtatgaacttgcccaccaaaattggcaacagagggaatggaacctgagaccttgag 13017776  T
Q  346 aggggcacactt 357  Q
    |||  |||||||    
T  13017775 aggaacacactt 13017764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 290 - 357
Target Start/End: Complemental strand, 24273324 - 24273257
Alignment:
Q  290 gtatggacttgccaaccgaaattagcatcagagagaatcgaacctgagaccttgagaggggcacactt 357  Q
    ||||||| ||||| |||||| |||||| |||||| |||||||||||||| ||| ||||| ||||||||    
T  24273324 gtatggatttgcccaccgaacttagcaccagagaaaatcgaacctgagatcttcagaggagcacactt 24273257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 346
Target Start/End: Complemental strand, 10048072 - 10048034
Alignment:
Q  308 aaattagcatcagagagaatcgaacctgagaccttgaga 346  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  10048072 aaattagcatcagagagaatcgaacctgagaccatgaga 10048034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 356
Target Start/End: Complemental strand, 29195194 - 29195138
Alignment:
Q  300 gccaaccgaaattagcatcagagagaatcgaacctgagaccttgagaggggcacact 356  Q
    ||||||| ||||| |||| |||||||||||||| || |||||||||||| |||||||    
T  29195194 gccaaccaaaattggcattagagagaatcgaacttgcgaccttgagaggagcacact 29195138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 341
Target Start/End: Original strand, 34844852 - 34844904
Alignment:
Q  290 gtatggactt-gccaaccgaaattagcatcagagagaatcgaacctgagacct 341  Q
    |||||||||| ||| ||||||||| ||| ||||||||||||||||||||||||    
T  34844852 gtatggacttagcccaccgaaattggcaccagagagaatcgaacctgagacct 34844904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 341
Target Start/End: Original strand, 40058946 - 40058998
Alignment:
Q  290 gtatggactt-gccaaccgaaattagcatcagagagaatcgaacctgagacct 341  Q
    |||||||||| ||| ||||||||| ||| ||||||||||||||||||||||||    
T  40058946 gtatggacttagcccaccgaaattggcaccagagagaatcgaacctgagacct 40058998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 341
Target Start/End: Complemental strand, 49287961 - 49287909
Alignment:
Q  290 gtatggactt-gccaaccgaaattagcatcagagagaatcgaacctgagacct 341  Q
    |||||||||| ||| ||||||||| ||| ||||||||||||||||||||||||    
T  49287961 gtatggacttagcccaccgaaattggcaccagagagaatcgaacctgagacct 49287909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 304 - 355
Target Start/End: Original strand, 3392774 - 3392825
Alignment:
Q  304 accgaaattagcatcagagagaatcgaacctgagaccttgagaggggcacac 355  Q
    |||||||||| || |||||  |||||||||||||||||||||||| ||||||    
T  3392774 accgaaattaacaccagaggaaatcgaacctgagaccttgagaggagcacac 3392825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 290 - 340
Target Start/End: Original strand, 5609296 - 5609347
Alignment:
Q  290 gtatggactt-gccaaccgaaattagcatcagagagaatcgaacctgagacc 340  Q
    |||||||||| ||| ||||||||| ||| |||||||||||||||||||||||    
T  5609296 gtatggacttagcccaccgaaattggcaccagagagaatcgaacctgagacc 5609347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 290 - 341
Target Start/End: Original strand, 22630281 - 22630332
Alignment:
Q  290 gtatggacttgccaaccgaaattagcatcagagagaatcgaacctgagacct 341  Q
    ||||||||||||| ||| ||||| ||| ||||| ||||||||||||||||||    
T  22630281 gtatggacttgcccaccaaaattggcaccagagggaatcgaacctgagacct 22630332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 356
Target Start/End: Original strand, 37980146 - 37980180
Alignment:
Q  322 gagaatcgaacctgagaccttgagaggggcacact 356  Q
    ||||||||||||||||||||||||||| |||||||    
T  37980146 gagaatcgaacctgagaccttgagaggagcacact 37980180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 391
Target Start/End: Complemental strand, 39288917 - 39288883
Alignment:
Q  357 ttgagaggagcatactccaagatcccaaaccaacc 391  Q
    |||||||||||| ||||||||||||||||||||||    
T  39288917 ttgagaggagcaaactccaagatcccaaaccaacc 39288883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 356
Target Start/End: Complemental strand, 56410028 - 56409994
Alignment:
Q  322 gagaatcgaacctgagaccttgagaggggcacact 356  Q
    ||||||||||||||||||||||||||| |||||||    
T  56410028 gagaatcgaacctgagaccttgagaggagcacact 56409994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 341
Target Start/End: Original strand, 19660641 - 19660678
Alignment:
Q  304 accgaaattagcatcagagagaatcgaacctgagacct 341  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  19660641 accgaaatttgcatcagagagaatcaaacctgagacct 19660678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 342
Target Start/End: Complemental strand, 25852317 - 25852264
Alignment:
Q  290 gtatggactt-gccaaccgaaattagcatcagagagaatcgaacctgagacctt 342  Q
    |||||||||| ||| ||||||||| ||| ||||| |||||||||||||||||||    
T  25852317 gtatggacttagcccaccgaaattggcaccagagggaatcgaacctgagacctt 25852264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 334
Target Start/End: Complemental strand, 32942473 - 32942428
Alignment:
Q  290 gtatggactt-gccaaccgaaattagcatcagagagaatcgaacct 334  Q
    |||||||||| ||| ||||||||| |||||||||||||||||||||    
T  32942473 gtatggacttagcccaccgaaattggcatcagagagaatcgaacct 32942428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 37109335 - 37109372
Alignment:
Q  308 aaattagcatcagagagaatcgaacctgagaccttgag 345  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  37109335 aaattggcaccagagagaatcgaacctgagaccttgag 37109372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 37274443 - 37274480
Alignment:
Q  308 aaattagcatcagagagaatcgaacctgagaccttgag 345  Q
    ||||||||| ||||||||||||||||| ||||||||||    
T  37274443 aaattagcaccagagagaatcgaacctaagaccttgag 37274480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 341
Target Start/End: Original strand, 9517735 - 9517787
Alignment:
Q  290 gtatggactt-gccaaccgaaattagcatcagagagaatcgaacctgagacct 341  Q
    |||||||||| ||| || |||||| ||| ||||||||||||||||||||||||    
T  9517735 gtatggacttagcccactgaaattggcaccagagagaatcgaacctgagacct 9517787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 392
Target Start/End: Complemental strand, 12710227 - 12710195
Alignment:
Q  360 agaggagcatactccaagatcccaaaccaacca 392  Q
    |||| ||||||||||||||||||||||||||||    
T  12710227 agagaagcatactccaagatcccaaaccaacca 12710195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 341
Target Start/End: Original strand, 27528889 - 27528941
Alignment:
Q  290 gtatggactt-gccaaccgaaattagcatcagagagaatcgaacctgagacct 341  Q
    |||||||||| ||| ||||||||| ||| ||||| ||||||||||||||||||    
T  27528889 gtatggacttagcccaccgaaattggcaccagagggaatcgaacctgagacct 27528941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 341
Target Start/End: Complemental strand, 33992729 - 33992677
Alignment:
Q  290 gtatggactt-gccaaccgaaattagcatcagagagaatcgaacctgagacct 341  Q
    |||||||||| ||| ||||||||| ||| ||||||||||||||||| ||||||    
T  33992729 gtatggacttagcccaccgaaattggcaccagagagaatcgaacctaagacct 33992677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 341
Target Start/End: Original strand, 43719159 - 43719211
Alignment:
Q  290 gtatggactt-gccaaccgaaattagcatcagagagaatcgaacctgagacct 341  Q
    |||||||||| ||| |||||||||||||  |||||||||||||||||| ||||    
T  43719159 gtatggacttagcccaccgaaattagcactagagagaatcgaacctgaaacct 43719211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 357 - 390
Target Start/End: Original strand, 240903 - 240936
Alignment:
Q  357 ttgagaggagcatactccaagatcccaaaccaac 390  Q
    ||||||||||||||||||||||||||||||||||    
T  240903 ttgagaggagcatactccaagatcccaaaccaac 240936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 291 - 356
Target Start/End: Original strand, 33585723 - 33585788
Alignment:
Q  291 tatggacttgccaaccgaaattagcatcagagagaatcgaacctgagaccttgagaggggcacact 356  Q
    |||||||||||| |||||||||| ||| ||||  |||||||||||| || |||||||| |||||||    
T  33585723 tatggacttgcctaccgaaattaacataagaggaaatcgaacctgaaactttgagaggagcacact 33585788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 347
Target Start/End: Original strand, 6953101 - 6953159
Alignment:
Q  290 gtatggactt-gccaaccgaaattagcatcagagagaatcgaacctgagaccttgagag 347  Q
    |||||||||| ||| ||||||||| ||| ||||| ||||||||||||||||||| ||||    
T  6953101 gtatggacttagcccaccgaaattggcaccagagggaatcgaacctgagacctttagag 6953159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 357
Target Start/End: Complemental strand, 18128618 - 18128552
Alignment:
Q  291 tatggacttgccaaccgaaattagcatcagagagaatcgaacctgagaccttgagaggggcacactt 357  Q
    |||||| | ||| ||||||||| ||| |||||||||||||| || ||||||||| ||| ||||||||    
T  18128618 tatggattcgcccaccgaaattggcaccagagagaatcgaatctaagaccttgaaaggagcacactt 18128552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 348
Target Start/End: Original strand, 26168943 - 26169001
Alignment:
Q  290 gtatggacttgccaaccgaaattagcatcagagagaatcgaacctgagaccttgagagg 348  Q
    ||||| ||||||| ||||||||| |||||||   ||||| |||||||||||||||||||    
T  26168943 gtatgaacttgcccaccgaaattggcatcaggaggaatcaaacctgagaccttgagagg 26169001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 357
Target Start/End: Complemental strand, 33017306 - 33017256
Alignment:
Q  308 aaattagcatcagagagaatcgaacctgagaccttga-gaggggcacactt 357  Q
    ||||| ||| ||||||||||||||||||||||||||| |||| ||||||||    
T  33017306 aaattggcaccagagagaatcgaacctgagaccttgaggaggagcacactt 33017256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 356
Target Start/End: Original strand, 34639302 - 34639367
Alignment:
Q  290 gtatggacttgccaaccgaaattagcatcagagagaatcgaacctgagaccttgagaggggcacact 356  Q
    |||||||||| || ||||||||| ||| ||||| || |||| ||||||||||||||||| |||||||    
T  34639302 gtatggacttacccaccgaaattggcaccagaggga-tcgagcctgagaccttgagaggagcacact 34639367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 348
Target Start/End: Complemental strand, 36094790 - 36094732
Alignment:
Q  290 gtatggacttgccaaccgaaattagcatcagagagaatcgaacctgagaccttgagagg 348  Q
    ||||||||||| | |||||||||   | ||||| |||||||||||||||||||||||||    
T  36094790 gtatggacttgtctaccgaaattgataccagagggaatcgaacctgagaccttgagagg 36094732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 356
Target Start/End: Original strand, 1372521 - 1372562
Alignment:
Q  315 catcagagagaatcgaacctgagaccttgagaggggcacact 356  Q
    |||||||| ||||||||||||||||||| ||||| |||||||    
T  1372521 catcagagggaatcgaacctgagaccttaagaggagcacact 1372562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 342
Target Start/End: Original strand, 3734717 - 3734770
Alignment:
Q  290 gtatggactt-gccaaccgaaattagcatcagagagaatcgaacctgagacctt 342  Q
    |||||||||| ||| ||||||||| ||| ||||| |||||||||||||||||||    
T  3734717 gtatggacttagcccaccgaaattggcaccagagggaatcgaacctgagacctt 3734770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Complemental strand, 18540390 - 18540353
Alignment:
Q  308 aaattagcatcagagagaatcgaacctgagaccttgag 345  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  18540390 aaattggcaccagagagaatcgaacctgagaccttgag 18540353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 346
Target Start/End: Original strand, 3403597 - 3403653
Alignment:
Q  290 gtatggacttgccaaccgaaattagcatcagagagaatcgaacctgagaccttgaga 346  Q
    ||||||||||||| ||||||||| ||| ||||  ||||||||| | |||||||||||    
T  3403597 gtatggacttgcccaccgaaattggcaccagatggaatcgaacataagaccttgaga 3403653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 341
Target Start/End: Complemental strand, 4718752 - 4718700
Alignment:
Q  290 gtatggactt-gccaaccgaaattagcatcagagagaatcgaacctgagacct 341  Q
    |||||||||| ||| ||||||||| ||| ||||| ||||||||||||||||||    
T  4718752 gtatggacttagcccaccgaaattggcaccagagggaatcgaacctgagacct 4718700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 341
Target Start/End: Original strand, 15259500 - 15259552
Alignment:
Q  290 gtatggactt-gccaaccgaaattagcatcagagagaatcgaacctgagacct 341  Q
    |||||||||| ||| ||||||||| ||| ||||| ||||||||||||||||||    
T  15259500 gtatggacttagcccaccgaaattggcaccagagggaatcgaacctgagacct 15259552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 344
Target Start/End: Complemental strand, 31843881 - 31843845
Alignment:
Q  308 aaattagcatcagagagaatcgaacctgagaccttga 344  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  31843881 aaattagcatcagagaaaatcgaacctgagactttga 31843845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 341
Target Start/End: Original strand, 34237749 - 34237801
Alignment:
Q  290 gtatggactt-gccaaccgaaattagcatcagagagaatcgaacctgagacct 341  Q
    |||||||||| ||| ||||||||| ||| ||||| ||||||||||||||||||    
T  34237749 gtatggacttagcccaccgaaattggcaccagagggaatcgaacctgagacct 34237801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 341
Target Start/End: Complemental strand, 39349363 - 39349311
Alignment:
Q  290 gtatggactt-gccaaccgaaattagcatcagagagaatcgaacctgagacct 341  Q
    |||||||||| ||| ||||||||| ||| ||||| ||||||||||||||||||    
T  39349363 gtatggacttagcccaccgaaattggcaccagagggaatcgaacctgagacct 39349311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 8796077 - 8796114
Alignment:
Q  308 aaattagcatcagagagaatcgaacctgagaccttgag 345  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  8796077 aaattagcatcagagagaatcgaacttgagaccttgag 8796114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 356
Target Start/End: Complemental strand, 40777108 - 40777056
Alignment:
Q  304 accgaaattagcatcagagagaatcgaacctgagaccttgagaggggcacact 356  Q
    ||||||||| |||  |||||||||| ||||||||||||||||||| |||||||    
T  40777108 accgaaattggcactagagagaatcaaacctgagaccttgagaggagcacact 40777056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 290 - 357
Target Start/End: Original strand, 30695344 - 30695411
Alignment:
Q  290 gtatggacttgccaaccgaaattagcatcagagagaatcgaacctgagaccttgagaggggcacactt 357  Q
    |||| |||||||| || ||||||| ||||||||| | |||||| ||||||||||||||  ||||||||    
T  30695344 gtatagacttgcccactgaaattaacatcagagatagtcgaacgtgagaccttgagagaagcacactt 30695411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 314 - 356
Target Start/End: Complemental strand, 39253783 - 39253740
Alignment:
Q  314 gcatcagagagaatcgaacctgagaccttg-agaggggcacact 356  Q
    |||||||||||||||||||||||||||||| ||||| |||||||    
T  39253783 gcatcagagagaatcgaacctgagaccttgaagaggagcacact 39253740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 336
Target Start/End: Complemental strand, 1178274 - 1178228
Alignment:
Q  290 gtatggacttgccaaccgaaattagcatcagagagaatcgaacctga 336  Q
    ||||||||||||| ||||||||| ||| ||| |||||||||||||||    
T  1178274 gtatggacttgcccaccgaaattggcaccagggagaatcgaacctga 1178228  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 342
Target Start/End: Original strand, 7485634 - 7485672
Alignment:
Q  304 accgaaattagcatcagagagaatcgaacctgagacctt 342  Q
    ||||||||| ||||||||| |||||||||||||||||||    
T  7485634 accgaaattggcatcagagggaatcgaacctgagacctt 7485672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 356
Target Start/End: Complemental strand, 26158920 - 26158854
Alignment:
Q  290 gtatggacttgccaaccgaaattagcatcagagagaatcgaacctgagaccttgagaggggcacact 356  Q
    |||||||||| || ||||||||| ||| || || ||||  ||||||||||||||||||| |||||||    
T  26158920 gtatggacttacccaccgaaattggcaccaaagggaatgaaacctgagaccttgagaggagcacact 26158854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 339
Target Start/End: Original strand, 53234004 - 53234054
Alignment:
Q  290 gtatggactt-gccaaccgaaattagcatcagagagaatcgaacctgagac 339  Q
    |||||||||| ||| ||||||||| ||| ||||||||||||||||||||||    
T  53234004 gtatggacttagcccaccgaaattggcaccagagagaatcgaacctgagac 53234054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 356
Target Start/End: Original strand, 53863850 - 53863900
Alignment:
Q  306 cgaaattagcatcagagagaatcgaacctgagaccttgagaggggcacact 356  Q
    ||||||| ||| |||||||||| |||||| ||||||||||||| |||||||    
T  53863850 cgaaattggcaccagagagaattgaacctaagaccttgagaggagcacact 53863900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 341
Target Start/End: Original strand, 10445123 - 10445156
Alignment:
Q  308 aaattagcatcagagagaatcgaacctgagacct 341  Q
    ||||||||| ||||||||||||||||||||||||    
T  10445123 aaattagcaccagagagaatcgaacctgagacct 10445156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 341
Target Start/End: Complemental strand, 24407349 - 24407312
Alignment:
Q  304 accgaaattagcatcagagagaatcgaacctgagacct 341  Q
    ||||||||||||| |||||||||||||| |||||||||    
T  24407349 accgaaattagcaccagagagaatcgaatctgagacct 24407312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 356
Target Start/End: Original strand, 28703388 - 28703437
Alignment:
Q  308 aaattagcatcagagagaatcgaacctgagaccttg-agaggggcacact 356  Q
    ||||| ||| |||||||||||||||||||||||||| ||||| |||||||    
T  28703388 aaattggcaccagagagaatcgaacctgagaccttgaagaggagcacact 28703437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 342
Target Start/End: Complemental strand, 51532892 - 51532839
Alignment:
Q  290 gtatggactt-gccaaccgaaattagcatcagagagaatcgaacctgagacctt 342  Q
    |||||||||| ||| ||||||||| |||| |||||||||||||| |||||||||    
T  51532892 gtatggacttagcccaccgaaattggcattagagagaatcgaacatgagacctt 51532839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 341
Target Start/End: Original strand, 8456244 - 8456296
Alignment:
Q  290 gtatggactt-gccaaccgaaattagcatcagagagaatcgaacctgagacct 341  Q
    |||||||||| ||| ||||||||| ||| ||||| ||||||||||||||||||    
T  8456244 gtatggacttagcccaccgaaattggcaccagagggaatcgaacctgagacct 8456296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 356
Target Start/End: Original strand, 11092150 - 11092202
Alignment:
Q  304 accgaaattagcatcagagagaatcgaacctgagaccttgagaggggcacact 356  Q
    ||||||||||||| ||| ||||||||||  ||||||||||||||  |||||||    
T  11092150 accgaaattagcaccagggagaatcgaagttgagaccttgagagtagcacact 11092202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 348
Target Start/End: Complemental strand, 15034440 - 15034396
Alignment:
Q  304 accgaaattagcatcagagagaatcgaacctgagaccttgagagg 348  Q
    ||||||||| ||| ||| |||||| ||||||||||||||||||||    
T  15034440 accgaaattggcaccagggagaattgaacctgagaccttgagagg 15034396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 341
Target Start/End: Complemental strand, 26108395 - 26108343
Alignment:
Q  290 gtatggactt-gccaaccgaaattagcatcagagagaatcgaacctgagacct 341  Q
    |||||||||| ||| ||||||||| ||| ||||| ||||||||||||||||||    
T  26108395 gtatggacttagcccaccgaaattggcaccagagggaatcgaacctgagacct 26108343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 341
Target Start/End: Original strand, 30807247 - 30807299
Alignment:
Q  290 gtatggactt-gccaaccgaaattagcatcagagagaatcgaacctgagacct 341  Q
    |||||||||| ||| ||||||||| ||| ||||| ||||||||||||||||||    
T  30807247 gtatggacttagcccaccgaaattggcaccagagggaatcgaacctgagacct 30807299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 356
Target Start/End: Complemental strand, 31766779 - 31766727
Alignment:
Q  304 accgaaattagcatcagagagaatcgaacctgagaccttgagaggggcacact 356  Q
    |||||||||  ||||||||  |||||||||||||||||| ||||| |||||||    
T  31766779 accgaaattgacatcagaggaaatcgaacctgagaccttaagaggagcacact 31766727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 356
Target Start/End: Complemental strand, 34844446 - 34844414
Alignment:
Q  324 gaatcgaacctgagaccttgagaggggcacact 356  Q
    ||||||||||||||||||||||||| |||||||    
T  34844446 gaatcgaacctgagaccttgagaggagcacact 34844414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 341
Target Start/End: Complemental strand, 35493014 - 35492962
Alignment:
Q  290 gtatggactt-gccaaccgaaattagcatcagagagaatcgaacctgagacct 341  Q
    |||||||||| ||| ||||||||| ||| ||||| ||||||||||||||||||    
T  35493014 gtatggacttagcccaccgaaattggcaccagagggaatcgaacctgagacct 35492962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 348
Target Start/End: Complemental strand, 40268584 - 40268540
Alignment:
Q  304 accgaaattagcatcagagagaatcgaacctgagaccttgagagg 348  Q
    ||||||||| ||||| | ||||||||||||||||||||| |||||    
T  40268584 accgaaattggcatcggggagaatcgaacctgagaccttaagagg 40268540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 392
Target Start/End: Complemental strand, 50583040 - 50583008
Alignment:
Q  360 agaggagcatactccaagatcccaaaccaacca 392  Q
    ||||||||| |||||||||||||||||||||||    
T  50583040 agaggagcaaactccaagatcccaaaccaacca 50583008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 290 - 357
Target Start/End: Original strand, 29237 - 29304
Alignment:
Q  290 gtatggacttgccaaccgaaattagcatcagagagaatcgaacctgagaccttgagaggggcacactt 357  Q
    |||||||||| || ||||||| | ||||||| | ||||||||||| |||||||||||||  |||||||    
T  29237 gtatggacttaccgaccgaaaatggcatcagcgggaatcgaacctaagaccttgagaggaacacactt 29304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 342
Target Start/End: Original strand, 5176 - 5229
Alignment:
Q  290 gtatggactt-gccaaccgaaattagcatcagagagaatcgaacctgagacctt 342  Q
    |||||||||| ||| ||||||||| ||| ||||| |||||||||||||||||||    
T  5176 gtatggacttagcccaccgaaattggcaccagagggaatcgaacctgagacctt 5229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 2695 - 2732
Alignment:
Q  308 aaattagcatcagagagaatcgaacctgagaccttgag 345  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  2695 aaattggcaccagagagaatcgaacctgagaccttgag 2732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 341
Target Start/End: Original strand, 8508 - 8553
Alignment:
Q  296 acttgccaaccgaaattagcatcagagagaatcgaacctgagacct 341  Q
    ||||||| ||||||||| ||| |||||| |||||||||||||||||    
T  8508 acttgcccaccgaaattggcaccagagataatcgaacctgagacct 8553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 19946 - 19983
Alignment:
Q  308 aaattagcatcagagagaatcgaacctgagaccttgag 345  Q
    |||||| || ||||||||||||||||||||||||||||    
T  19946 aaattaacaccagagagaatcgaacctgagaccttgag 19983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 342
Target Start/End: Original strand, 97460 - 97513
Alignment:
Q  290 gtatggactt-gccaaccgaaattagcatcagagagaatcgaacctgagacctt 342  Q
    |||||||||| ||| ||||||||| ||| ||||| |||||||||||||||||||    
T  97460 gtatggacttagcccaccgaaattggcaccagagggaatcgaacctgagacctt 97513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 341
Target Start/End: Complemental strand, 40428 - 40376
Alignment:
Q  290 gtatggactt-gccaaccgaaattagcatcagagagaatcgaacctgagacct 341  Q
    |||||||||| ||| ||||||||| ||| ||||| ||||||||||||||||||    
T  40428 gtatggacttagcccaccgaaattggcaccagagggaatcgaacctgagacct 40376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 341
Target Start/End: Complemental strand, 161912 - 161860
Alignment:
Q  290 gtatggactt-gccaaccgaaattagcatcagagagaatcgaacctgagacct 341  Q
    |||||||||| ||| ||||||||| ||| ||||| ||||||||||||||||||    
T  161912 gtatggacttagcccaccgaaattggcaccagagggaatcgaacctgagacct 161860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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