View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15163_high_43 (Length: 423)
Name: NF15163_high_43
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_high_43 |
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Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 18 - 410
Target Start/End: Original strand, 55334922 - 55335321
Alignment:
| Q |
18 |
ttaatcgagtgggatatgccatcaacaaacattgtattatcatagttaacccctaaagacgagtgaaccaaacttattatttaacccacacaaaatcttt |
117 |
Q |
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| T |
55334922 |
ttaatcgagtgggatatgccatcaacaaacattgtattatcatagttaacccctaaagacgagtgaaccaaacttattatttaacccacacaaaatcttt |
55335021 |
T |
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| Q |
118 |
aaaaacatgatcaatatcttcttcagctagccgatttctttttacatatataataatattacatactatttaagttattactgtttctcacgtgag---- |
213 |
Q |
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| T |
55335022 |
aaaaacatgatcaatatcttcttcagctagccgatttctttttacatatataataatattacatactatttaagttattactgtttctcacgtgagatat |
55335121 |
T |
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| Q |
214 |
atatatatattttttgaattgaaattattgacattgtatttactat-aacaatatactaccctctcnnnnnnntctat--tatactataagattgattaa |
310 |
Q |
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| T |
55335122 |
atatatatatattttgaattgaaattattgacattgtatttactatcaacaatatactaccctctcaaaaaaatctattatatactataagattgattaa |
55335221 |
T |
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| Q |
311 |
gagataagatatttgtataattgttttgagataacttttagtcaactgagctataaatttattgtgttcttaacctctcttacttctccttttcctttct |
410 |
Q |
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| T |
55335222 |
gagataagatatttgtataattgttttgagacaacttttaatcaactgagctataaatttattgtgtttttaacctctcttacttctccttttcctttct |
55335321 |
T |
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