View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15163_high_44 (Length: 419)
Name: NF15163_high_44
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_high_44 |
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Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 7 - 407
Target Start/End: Original strand, 6635431 - 6635831
Alignment:
| Q |
7 |
atatcatcaactaagataaggtctgaatccaagtacacaacttttcttacacataatggaattagatttgccaaatagcttcttgcataattgagaggac |
106 |
Q |
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| T |
6635431 |
atatcatccactaagataaggtctgaatccaagtacacaacttttcttacacataatggaattagatttgccaaatagcttcttgcataattgagaggac |
6635530 |
T |
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| Q |
107 |
aatcaagtgctgatcgaatcgaggttgagattaaacccgaaacgattgaatcatcaaaattgtagacttggaatttgaggtatgggaatgattttgagat |
206 |
Q |
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| T |
6635531 |
aatcaagtgctgatcgaatcgaggttgagattaaacccgaaacgattgaatcatcaaaattgtagacttggaatttgaggtatgggaatgattttgagat |
6635630 |
T |
|
| Q |
207 |
tatggagtggagaagtgaagtgtttgaggaacaaacaaagtgaaagatgatgttttgtggacatgatgagtgttggaggacagagaggattgcagccatg |
306 |
Q |
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| T |
6635631 |
tatggagtggagaagtgaagtgtttgaggaacaaacaaagtgaaagatgatgttttgtggacatgatgagtgttggaggacagagaggattgcagccatg |
6635730 |
T |
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| Q |
307 |
gatcctcggatatatgtcgtgtctaatgtcattgccacatggcctgcttcctcggagcagatatatgtgtcagtgtcatgttcggtgtcttcttctggct |
406 |
Q |
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| T |
6635731 |
gatcctcggatatatgttgtgtctaatgtcattgccacatggactgcttcctcggagcagatatatgtgccagtgtcatgttcggtgtcttcttctggct |
6635830 |
T |
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| Q |
407 |
c |
407 |
Q |
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| T |
6635831 |
c |
6635831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 228 - 341
Target Start/End: Original strand, 52164544 - 52164657
Alignment:
| Q |
228 |
gtttgaggaacaaacaaagtgaaagatgatgttttgtggacatgatgagtgttggaggacagagaggattgcagccatggatcctcggatatatgtcgtg |
327 |
Q |
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| T |
52164544 |
gtttgatgaacaaacgaagtggaagaatatgttttgtggacatgatgaatgttggaggattgataagattgctgccatggatcctcggatatatgttgtg |
52164643 |
T |
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| Q |
328 |
tctaatgtcattgc |
341 |
Q |
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| T |
52164644 |
tcgagtgtcattgc |
52164657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 52164413 - 52164453
Alignment:
| Q |
97 |
ttgagaggacaatcaagtgctgatcgaatcgaggttgagat |
137 |
Q |
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| T |
52164413 |
ttgagaggacaatcaagagctgaacgaatggaggttgagat |
52164453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 244 - 365
Target Start/End: Original strand, 7266981 - 7267102
Alignment:
| Q |
244 |
aagtgaaagatgatgttttgtggacatgatgagtgttggaggacagagaggattgcagccatggatcctcggatatatgtcgtgtctaatgtcattgcca |
343 |
Q |
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| T |
7266981 |
aagtggaagatggtgttttctggacaagaggagtgttggaggacggagagaatggccgccattgagccgcggaggtattttatgtctagtgtcattgcaa |
7267080 |
T |
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| Q |
344 |
catggcctgcttcctcggagca |
365 |
Q |
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||||| ||||||| || ||||| |
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| T |
7267081 |
catggactgcttcgtctgagca |
7267102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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