View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15163_high_48 (Length: 399)

Name: NF15163_high_48
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15163_high_48
NF15163_high_48
[»] chr4 (53 HSPs)
chr4 (16-399)||(27430877-27431256)
chr4 (182-399)||(27444685-27444902)
chr4 (230-376)||(27554364-27554509)
chr4 (253-389)||(27526074-27526210)
chr4 (255-399)||(27498447-27498591)
chr4 (255-399)||(27501349-27501493)
chr4 (263-399)||(27557521-27557657)
chr4 (253-399)||(27513738-27513884)
chr4 (269-389)||(27505680-27505800)
chr4 (261-399)||(27487015-27487153)
chr4 (261-389)||(27479943-27480071)
chr4 (261-389)||(27523373-27523501)
chr4 (262-399)||(27516580-27516717)
chr4 (291-389)||(27503964-27504062)
chr4 (253-399)||(27473924-27474070)
chr4 (269-363)||(27502113-27502207)
chr4 (290-399)||(27411455-27411564)
chr4 (274-399)||(27567287-27567412)
chr4 (291-399)||(27412696-27412804)
chr4 (284-399)||(27415653-27415768)
chr4 (291-389)||(27468327-27468425)
chr4 (269-399)||(27469492-27469622)
chr4 (291-389)||(27524566-27524664)
chr4 (284-389)||(27414297-27414402)
chr4 (292-389)||(27475580-27475677)
chr4 (284-389)||(27514933-27515038)
chr4 (291-399)||(27425844-27425952)
chr4 (275-399)||(27460510-27460634)
chr4 (261-389)||(27476729-27476857)
chr4 (295-387)||(27490004-27490096)
chr4 (296-387)||(27508896-27508987)
chr4 (284-399)||(27585720-27585835)
chr4 (284-399)||(27421924-27422043)
chr4 (337-399)||(27423254-27423316)
chr4 (290-399)||(27424513-27424622)
chr4 (253-342)||(27466910-27466999)
chr4 (274-399)||(27500321-27500446)
chr4 (238-399)||(27502754-27502915)
chr4 (291-395)||(27485943-27486047)
chr4 (291-399)||(27497322-27497430)
chr4 (291-399)||(27506730-27506838)
chr4 (291-399)||(27563346-27563454)
chr4 (292-395)||(27478884-27478987)
chr4 (253-399)||(27571655-27571801)
chr4 (238-335)||(27507760-27507857)
chr4 (274-381)||(27556362-27556469)
chr4 (278-387)||(17970343-17970452)
chr4 (274-399)||(27419054-27419179)
chr4 (291-399)||(27570049-27570157)
chr4 (21-149)||(27444523-27444642)
chr4 (274-333)||(27559223-27559282)
chr4 (291-389)||(27420450-27420548)
chr4 (317-399)||(27527193-27527275)
[»] chr3 (12 HSPs)
chr3 (261-387)||(38028736-38028862)
chr3 (261-387)||(38040051-38040177)
chr3 (261-386)||(38036763-38036888)
chr3 (260-399)||(55084818-55084957)
chr3 (260-396)||(50909995-50910131)
chr3 (260-387)||(38033744-38033875)
chr3 (260-384)||(50904761-50904885)
chr3 (275-387)||(50911853-50911965)
chr3 (275-386)||(48840696-48840806)
chr3 (260-396)||(38024844-38024980)
chr3 (260-396)||(38031296-38031432)
chr3 (291-399)||(38043935-38044043)
[»] chr8 (3 HSPs)
chr8 (261-387)||(21604724-21604850)
chr8 (260-396)||(21607265-21607401)
chr8 (275-366)||(21634608-21634699)
[»] chr5 (4 HSPs)
chr5 (255-399)||(1754206-1754349)
chr5 (291-399)||(1756757-1756865)
chr5 (261-389)||(1759290-1759422)
chr5 (262-399)||(1754720-1754857)
[»] chr2 (1 HSPs)
chr2 (278-387)||(3073613-3073722)


Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 53)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 16 - 399
Target Start/End: Original strand, 27430877 - 27431256
Alignment:
16 caagtcaaataagtctcttcgtattatatttctgcgtataagtttaatttgcaatacaaattaactgaaaagtttcctaagcaagtcataatctctttgt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
27430877 caagtcaaataagtctcttcgtattatatttctgcgtataagtttaatttgcaatacaaattaactgaaaagtttcctaagcaagtcataatctctctgt 27430976  T
116 ttatatataatcacctgactcagttgtttttctannnnnnnnnnncatttacataaggtagactaagtaagtgcctgctgtacaatttttcctcaaataa 215  Q
    |||||    || ||||||||| ||||||||||||           |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
27430977 ttata----ataacctgactcggttgtttttctattttttttcttcatttaaataaggtagactaagtaagtgcctgctgtacaatttttcctcaaataa 27431072  T
216 tctatttcatttccttcttctgaagatgttagcacagattcaaacgagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgt 315  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
27431073 tctatttcagttccttcttctgaagatgttagcacagattcaaacgagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccaccggt 27431172  T
316 tggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggttcaagtatgatattgggatcac 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
27431173 tggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggttcaagtatgatattgggatcac 27431256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 182 - 399
Target Start/End: Original strand, 27444685 - 27444902
Alignment:
182 gtaagtgcctgctgtacaatttttcctcaaataatctatttcatttccttcttctgaagatgttagcacagattcaaacgagaagtaatatttaagaaaa 281  Q
    |||||||||| |||||||||||| ||| ||||||||||| ||| ||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||    
27444685 gtaagtgccttctgtacaattttgcctaaaataatctatgtcagttccttcatctgaagatattagcacagattcaaacgagaagtaatatctaagaaaa 27444784  T
282 cgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggttcaa 381  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||| |||||||||||||| | |||| ||||    
27444785 cgtcttctctgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataattcttgaaatgatgattggctcaa 27444884  T
382 gtatgatattgggatcac 399  Q
    ||||||||||||||||||    
27444885 gtatgatattgggatcac 27444902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 230 - 376
Target Start/End: Complemental strand, 27554509 - 27554364
Alignment:
230 ttcttctgaagatgttagcacagattcaaacgagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatc 329  Q
    |||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||| |||||||| |||||||    
27554509 ttcttctgaagg-gttagcacagattcaaacgagaagtaatatctaagaaaacgtcttctctacaaggaattgtgagactacccgttggatgatcatatc 27554411  T
330 caaattgttcctcggcttgattcaacaattcttgaaatgacggttgg 376  Q
    ||||||||||||| |||||||||| |||||||||||| || ||||||    
27554410 caaattgttcctcagcttgattcagcaattcttgaaacgatggttgg 27554364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 253 - 389
Target Start/End: Original strand, 27526074 - 27526210
Alignment:
253 attcaaacgagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattc 352  Q
    ||||||||||||||| || | ||||||||||||||||||||||||||| ||||||||||| |||||||| |||||| ||||||||||||| |||||  ||    
27526074 attcaaacgagaagtgatctctaagaaaacgtcttctctgcaaggaatagtgagaccacccgttggatgatcatattcaaattgttcctcagcttggctc 27526173  T
353 aacaattcttgaaatgacggttggttcaagtatgata 389  Q
    ||||||||||| ||||| | |||||||||||||||||    
27526174 aacaattcttggaatgaggtttggttcaagtatgata 27526210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 255 - 399
Target Start/End: Complemental strand, 27498591 - 27498447
Alignment:
255 tcaaacgagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaa 354  Q
    ||||||||||||| |||| |||||| | |||||||| ||||||||| |||||||||||  ||||||| |||||| | ||||||||||||||||| |||||    
27498591 tcaaacgagaagtgatatctaagaacatgtcttctccgcaaggaatagtgagaccacccattggatgatcatattcgaattgttcctcggcttggttcaa 27498492  T
355 caattcttgaaatgacggttggttcaagtatgatattgggatcac 399  Q
    ||| ||||| || || |||||||||||||||||||| ||||||||    
27498491 caagtcttggaacgatggttggttcaagtatgatatagggatcac 27498447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 255 - 399
Target Start/End: Complemental strand, 27501493 - 27501349
Alignment:
255 tcaaacgagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaa 354  Q
    |||||| |||||| |||| |||||| | ||||||||| |||||||| ||||||||||| |||||||| || ||| ||||||||||||||||||| |||||    
27501493 tcaaacaagaagtgatatctaagaacatgtcttctctacaaggaatagtgagaccacccgttggatgatcgtattcaaattgttcctcggcttggttcaa 27501394  T
355 caattcttgaaatgacggttggttcaagtatgatattgggatcac 399  Q
    ||| ||||||||  | |||||||| ||||||||||||||||||||    
27501393 caagtcttgaaacaatggttggtttaagtatgatattgggatcac 27501349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 263 - 399
Target Start/End: Complemental strand, 27557657 - 27557521
Alignment:
263 gaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattctt 362  Q
    ||||| |||| ||||||||| ||||||||||| ||||| |||||||||||  |||||||  ||||| ||||||||||||| |||||||||| ||||||||    
27557657 gaagtgatatctaagaaaacatcttctctgcatggaatagtgagaccacccattggatgaacatattcaaattgttcctcagcttgattcagcaattctt 27557558  T
363 gaaatgacggttggttcaagtatgatattgggatcac 399  Q
    ||||||| |||||||| |||||||| |||||||||||    
27557557 gaaatgatggttggtttaagtatgacattgggatcac 27557521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 253 - 399
Target Start/End: Original strand, 27513738 - 27513884
Alignment:
253 attcaaacgagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattc 352  Q
    |||||| |||||||| |||| |||||| || ||||||||||||||||| |||||||||||  ||||||| |||||| || ||||||| || ||||| |||    
27513738 attcaagcgagaagtgatatctaagaatacttcttctctgcaaggaatagtgagaccacccattggatgatcatattcatattgttcttcagcttggttc 27513837  T
353 aacaattcttgaaatgacggttggttcaagtatgatattgggatcac 399  Q
    ||||||||||| || || | |||||||||||||||||||||||||||    
27513838 aacaattcttggaacgaggtttggttcaagtatgatattgggatcac 27513884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 269 - 389
Target Start/End: Original strand, 27505680 - 27505800
Alignment:
269 atatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatg 368  Q
    |||| ||||||||  ||||||||||||||||| |||||||||||  |||||||||||||| ||||||||||||| ||||| |||||||||||||| ||||    
27505680 atatctaagaaaatctcttctctgcaaggaatagtgagaccacccattggatggtcatattcaaattgttcctcagcttggttcaacaattcttggaatg 27505779  T
369 acggttggttcaagtatgata 389  Q
    | | |||||||||||||||||    
27505780 aggtttggttcaagtatgata 27505800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 261 - 399
Target Start/End: Complemental strand, 27487153 - 27487015
Alignment:
261 gagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattc 360  Q
    |||||||||||| |||||||| ||||||| |||||||||| || ||||||||  ||||||| |||||| |||||||||| || ||||| |||||||||||    
27487153 gagaagtaatatctaagaaaatgtcttctttgcaaggaatagtaagaccacccattggatgatcatattcaaattgttcttcagcttggttcaacaattc 27487054  T
361 ttgaaatgacggttggttcaagtatgatattgggatcac 399  Q
    |||||| || |||||||| ||||||||||  ||||||||    
27487053 ttgaaacgatggttggtttaagtatgataaagggatcac 27487015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 261 - 389
Target Start/End: Complemental strand, 27480071 - 27479943
Alignment:
261 gagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattc 360  Q
    ||||| |||||| |||||||| |||||||||||||||||| |||||||||||  ||||||| |||||| ||||||||||||| ||||| |||||||| |     
27480071 gagaattaatatctaagaaaatgtcttctctgcaaggaatggtgagaccacccattggatgatcatattcaaattgttcctcagcttggttcaacaactt 27479972  T
361 ttgaaatgacggttggttcaagtatgata 389  Q
    ||| ||||| | |||||||||||||||||    
27479971 ttggaatgatgtttggttcaagtatgata 27479943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 261 - 389
Target Start/End: Original strand, 27523373 - 27523501
Alignment:
261 gagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattc 360  Q
    |||||||||||| |||||||| ||||||| |||||||||| || ||||||||  |||||||||||||| ||||||||||||||||||   ||||||||||    
27523373 gagaagtaatatctaagaaaatgtcttctttgcaaggaatagttagaccacccattggatggtcatattcaaattgttcctcggcttcgctcaacaattc 27523472  T
361 ttgaaatgacggttggttcaagtatgata 389  Q
    ||| ||||| | ||||||||| |||||||    
27523473 ttggaatgaagtttggttcaaatatgata 27523501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 262 - 399
Target Start/End: Original strand, 27516580 - 27516717
Alignment:
262 agaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattct 361  Q
    |||||| |||| ||||||||| |||||| |||||||||| |||||||| ||  |||||||||||||| ||||||||||||| ||||| ||||||||||||    
27516580 agaagtgatatctaagaaaacttcttctttgcaaggaatagtgagaccccccattggatggtcatattcaaattgttcctcagcttggttcaacaattct 27516679  T
362 tgaaatgacggttggttcaagtatgatattgggatcac 399  Q
    || |||||   ||| ||||| |||||||| ||||||||    
27516680 tggaatgatttttgcttcaaatatgatatagggatcac 27516717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 291 - 389
Target Start/End: Complemental strand, 27504062 - 27503964
Alignment:
291 tgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggttcaagtatgata 389  Q
    |||||||||| ||||| |||||  ||||||| ||||||||||| | ||||||||||||| ||||||| ||||||||||| |||||||||||||||||||    
27504062 tgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcctcggcttgactcaacaagtcttgaaatgaaggttggttcaagtatgata 27503964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 253 - 399
Target Start/End: Complemental strand, 27474070 - 27473924
Alignment:
253 attcaaacgagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattc 352  Q
    |||||| |||||||| || | ||||||||||||||||| ||||||||| |||||||||||  ||||||| |||||| |||||||||||||   |||  ||    
27474070 attcaagcgagaagtgatgtctaagaaaacgtcttctccgcaaggaatggtgagaccacccattggatgatcatattcaaattgttcctcactttggctc 27473971  T
353 aacaattcttgaaatgacggttggttcaagtatgatattgggatcac 399  Q
    | ||||||||| |||||   ||| ||||| |||||||| ||||||||    
27473970 agcaattcttggaatgatttttgcttcaaatatgatatagggatcac 27473924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 269 - 363
Target Start/End: Original strand, 27502113 - 27502207
Alignment:
269 atatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttg 363  Q
    |||| |||||||| |||||||||||||||||| || ||||||||  ||||||| |||||| ||||||||||||| ||||| ||||||||||||||    
27502113 atatctaagaaaatgtcttctctgcaaggaatagttagaccacccattggatgatcatattcaaattgttcctcagcttggttcaacaattcttg 27502207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 290 - 399
Target Start/End: Original strand, 27411455 - 27411564
Alignment:
290 ctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggttcaagtatgata 389  Q
    |||||||||||||||||||||||  | ||||| ||||||||||||| ||| || |||||||| |  ||||||||||| || |||||||||||||||||||    
27411455 ctgcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaacgatggttggttcaagtatgata 27411554  T
390 ttgggatcac 399  Q
     ||| |||||    
27411555 ctggaatcac 27411564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 274 - 399
Target Start/End: Complemental strand, 27567412 - 27567287
Alignment:
274 taagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggt 373  Q
    ||||||| | ||||| |||||||||||||||||||||||  ||||||| ||||| ||||||| ||| || | |||||| |  ||||||||||| || |||    
27567412 taagaaagcatcttcgctgcaaggaattgtgagaccacccattggatgatcataaccaaattcttcttctgtttgatttagtaattcttgaaacgatggt 27567313  T
374 tggttcaagtatgatattgggatcac 399  Q
    |||||||||||||||| ||| |||||    
27567312 tggttcaagtatgatactggaatcac 27567287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 291 - 399
Target Start/End: Complemental strand, 27412804 - 27412696
Alignment:
291 tgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggttcaagtatgatat 390  Q
    |||||||||| ||||| |||||  ||||||| ||||||||||| | ||| || |||||| |||| || ||||||||| | ||||||||||||||||||||    
27412804 tgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgactcaataagtcttgaaataatggttggttcaagtatgatat 27412705  T
391 tgggatcac 399  Q
    |||||||||    
27412704 tgggatcac 27412696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 284 - 399
Target Start/End: Complemental strand, 27415768 - 27415653
Alignment:
284 tcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggttcaagt 383  Q
    |||||| |||||||||| ||||| |||||  | | ||| ||||||||||| | |||||| |||||| ||||||| |||||||| || |||||||||||||    
27415768 tcttctgtgcaaggaatggtgaggccacccatggaatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagt 27415669  T
384 atgatattgggatcac 399  Q
    ||||||| ||||||||    
27415668 atgatatggggatcac 27415653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 291 - 389
Target Start/End: Original strand, 27468327 - 27468425
Alignment:
291 tgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggttcaagtatgata 389  Q
    |||||||||| ||||| |||||  | ||||| ||||||||||||| |||||||| |||| ||||||| ||||||||||| |||||||| ||||||||||    
27468327 tgcaaggaatggtgaggccacccatgggatgatcatatccaaattcttcctcggattgactcaacaagtcttgaaatgaaggttggtttaagtatgata 27468425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 269 - 399
Target Start/End: Complemental strand, 27469622 - 27469492
Alignment:
269 atatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatg 368  Q
    |||| ||||||||  ||||||||||||||||| || ||||||||  ||||||| |||||| |||||||||| || |||||  |||||| |||||| ||||    
27469622 atatctaagaaaatttcttctctgcaaggaatagttagaccacccattggatgttcatattcaaattgttcttcagcttggctcaacagttcttgtaatg 27469523  T
369 acggttggttcaagtatgatattgggatcac 399  Q
    | | ||| ||||| |||||||| ||||||||    
27469522 atgtttgcttcaaatatgatatagggatcac 27469492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 291 - 389
Target Start/End: Complemental strand, 27524664 - 27524566
Alignment:
291 tgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggttcaagtatgata 389  Q
    |||| ||||| ||||| |||||  ||||||| ||||||||||| | |||||| |||||||||||||| ||||||||||| ||||||||||| |||||||    
27524664 tgcacggaatggtgaggccacccattggatgatcatatccaaactcttcctcagcttgattcaacaagtcttgaaatgaaggttggttcaaatatgata 27524566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 284 - 389
Target Start/End: Original strand, 27414297 - 27414402
Alignment:
284 tcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggttcaagt 383  Q
    ||||| ||||| |||||||| ||||||||  ||||||| ||||||||||||| ||| || | |||||| |  |||||||||||||| |||||||||||||    
27414297 tcttcactgcacggaattgtaagaccacccattggatgatcatatccaaattcttcttctgattgatttagtaattcttgaaatgagggttggttcaagt 27414396  T
384 atgata 389  Q
    ||||||    
27414397 atgata 27414402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 292 - 389
Target Start/End: Original strand, 27475580 - 27475677
Alignment:
292 gcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggttcaagtatgata 389  Q
    ||||||||| ||||| |||||  | ||||| ||||||||||| | ||||||||||||| ||||||| ||||||||||| ||||| |||||||||||||    
27475580 gcaaggaatggtgaggccacccatgggatgatcatatccaaactcttcctcggcttgactcaacaagtcttgaaatgaaggttgattcaagtatgata 27475677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 284 - 389
Target Start/End: Complemental strand, 27515038 - 27514933
Alignment:
284 tcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggttcaagt 383  Q
    |||||| | |||||||| ||||| |||||  | ||||| ||||||||||||| |||||||| |||| ||||||| ||||||||||| ||||| |||||||    
27515038 tcttctgtacaaggaatggtgaggccacccatgggatgatcatatccaaattcttcctcggattgactcaacaagtcttgaaatgaaggttgattcaagt 27514939  T
384 atgata 389  Q
    ||||||    
27514938 atgata 27514933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 291 - 399
Target Start/End: Complemental strand, 27425952 - 27425844
Alignment:
291 tgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggttcaagtatgatat 390  Q
    |||||||||| ||||| |||||  | ||||| ||||||||||| | ||||||   |||| |||| || ||||||||||| ||||||||||||||||||||    
27425952 tgcaaggaatggtgaggccacccatgggatgatcatatccaaactcttcctcaaattgactcaataagtcttgaaatgatggttggttcaagtatgatat 27425853  T
391 tgggatcac 399  Q
    |||||||||    
27425852 tgggatcac 27425844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 275 - 399
Target Start/End: Complemental strand, 27460634 - 27460510
Alignment:
275 aagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggtt 374  Q
    ||||||| |||||||||||||||||| |||||||||||  ||||||| |||||| |||||||||||||   |||  ||| ||||||||| |||||   ||    
27460634 aagaaaatgtcttctctgcaaggaatggtgagaccacccattggatgatcatattcaaattgttcctcactttggctcagcaattcttggaatgattttt 27460535  T
375 ggttcaagtatgatattgggatcac 399  Q
    | ||||| |||||||| ||||||||    
27460534 gcttcaaatatgatatagggatcac 27460510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 261 - 389
Target Start/End: Complemental strand, 27476857 - 27476729
Alignment:
261 gagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattc 360  Q
    |||| |||||||  ||||||| |||||||||||||||||| || ||||||||  ||||||| |||||| |||||||||||||   |||  ||| || |||    
27476857 gagaggtaatatccaagaaaatgtcttctctgcaaggaatagttagaccacccattggatgatcatattcaaattgttcctcactttggctcagcagttc 27476758  T
361 ttgaaatgacggttggttcaagtatgata 389  Q
    ||| ||||| | |||||||||||||||||    
27476757 ttggaatgaggtttggttcaagtatgata 27476729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 295 - 387
Target Start/End: Complemental strand, 27490096 - 27490004
Alignment:
295 aggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggttcaagtatga 387  Q
    |||||| ||||| |||||  ||||||| ||||||||||| | ||||||||||||||||||||| ||||||||||| |||| ||| ||||||||    
27490096 aggaatggtgaggccacccattggatgatcatatccaaactcttcctcggcttgattcaacaaatcttgaaatgatggtttgtttaagtatga 27490004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 296 - 387
Target Start/End: Complemental strand, 27508987 - 27508896
Alignment:
296 ggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggttcaagtatga 387  Q
    ||||| ||||| ||||| |||||||| ||||||||||| | |||||| || ||||||||||| ||||||||||| ||||||||||| |||||    
27508987 ggaatggtgaggccacccgttggatgatcatatccaaactcttcctcagcctgattcaacaagtcttgaaatgaaggttggttcaaatatga 27508896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 284 - 399
Target Start/End: Complemental strand, 27585835 - 27585720
Alignment:
284 tcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggttcaagt 383  Q
    |||||| |||||||||| |||||||| ||  ||||||| ||||||||||| | ||| ||||||||| ||| ||| ||||||||  | |||||||||||||    
27585835 tcttctgtgcaaggaatggtgagacctcccattggatgatcatatccaaactcttcttcggcttgactcatcaaatcttgaaacaatggttggttcaagt 27585736  T
384 atgatattgggatcac 399  Q
    ||||||  ||||||||    
27585735 atgatacggggatcac 27585720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 284 - 399
Target Start/End: Original strand, 27421924 - 27422043
Alignment:
284 tcttctctgcaaggaattgtgagaccacctgttggatggtcat----atccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggttc 379  Q
    ||||| ||||||||||||||||||||||| |||||||| || |    ||||||||| ||| || |||||||| |  |||||||||||| | |||||||||    
27421924 tcttcactgcaaggaattgtgagaccacccgttggatgatcgtatccatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttc 27422023  T
380 aagtatgatattgggatcac 399  Q
    |||||||||| ||| |||||    
27422024 aagtatgatactggaatcac 27422043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 337 - 399
Target Start/End: Complemental strand, 27423316 - 27423254
Alignment:
337 ttcctcggcttgattcaacaattcttgaaatgacggttggttcaagtatgatattgggatcac 399  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||  |||||||    
27423316 ttcctcggcttgactcaacaattcttgaaatgaaggttggttcaagtatgatatgcggatcac 27423254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 290 - 399
Target Start/End: Original strand, 27424513 - 27424622
Alignment:
290 ctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggttcaagtatgata 389  Q
    ||||| ||||| || ||||||||  ||||||| ||||||||| ||| ||| || | |||||| | ||||||||||||||| |||||||||||||||||||    
27424513 ctgcacggaatggtaagaccacccattggatgatcatatccatattcttcttcagattgatttagcaattcttgaaatgaaggttggttcaagtatgata 27424612  T
390 ttgggatcac 399  Q
     ||| |||||    
27424613 ctggaatcac 27424622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 253 - 342
Target Start/End: Complemental strand, 27466999 - 27466910
Alignment:
253 attcaaacgagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctc 342  Q
    |||||| | |||||| || | ||||||||| ||||||||||||||||| |||||||||||  ||||||| |||||| |||||||||||||    
27466999 attcaagctagaagtgatgtctaagaaaacttcttctctgcaaggaatagtgagaccacccattggatgatcatattcaaattgttcctc 27466910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 274 - 399
Target Start/End: Original strand, 27500321 - 27500446
Alignment:
274 taagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggt 373  Q
    |||||||| |||||||||||||||||| ||||  |||||  |||||||||||||||| || ||||| || | |||  ||| ||||||||| |||||   |    
27500321 taagaaaaggtcttctctgcaaggaatagtgatgccacccattggatggtcatatccgaactgttcttcagattggctcagcaattcttggaatgaactt 27500420  T
374 tggttcaagtatgatattgggatcac 399  Q
    ||||| ||||||||||| ||||||||    
27500421 tggtttaagtatgatatagggatcac 27500446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 238 - 399
Target Start/End: Original strand, 27502754 - 27502915
Alignment:
238 aagatgttagcacagattcaaacgagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgt 337  Q
    |||||||||||||  | |||| |||||||| |||| || |||||  ||||||   |||||||| || ||||||||  ||||||||||||||||||||| |    
27502754 aagatgttagcacctactcaagcgagaagtgatatctacgaaaaaatcttcttcacaaggaatagtaagaccacccattggatggtcatatccaaattct 27502853  T
338 tcctcggcttgattcaacaattcttgaaatgacggttggttcaagtatgatattgggatcac 399  Q
    ||| | |||||  ||| ||| ||||||||||| | ||| ||||| ||||| ||||| |||||    
27502854 tccacagcttggctcagcaagtcttgaaatgaagtttgattcaaatatgacattggaatcac 27502915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 291 - 395
Target Start/End: Original strand, 27485943 - 27486047
Alignment:
291 tgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggttcaagtatgatat 390  Q
    |||||||||| ||||| |||||  | ||||| ||||||||||||| ||| || |||||||  | ||||||||||||  | ||||||||||||||||||||    
27485943 tgcaaggaatggtgaggccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaacaatggttggttcaagtatgatat 27486042  T
391 tggga 395  Q
    |||||    
27486043 tggga 27486047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 291 - 399
Target Start/End: Original strand, 27497322 - 27497430
Alignment:
291 tgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggttcaagtatgatat 390  Q
    |||||||||| ||||| |||||||| ||||| ||||||||||| | |||||| |||||| ||||||| | ||||||  | |||||||| |||||||| ||    
27497322 tgcaaggaatggtgaggccacctgtgggatgatcatatccaaactcttcctcagcttgactcaacaaatattgaaacaatggttggtttaagtatgagat 27497421  T
391 tgggatcac 399  Q
     ||||||||    
27497422 agggatcac 27497430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 291 - 399
Target Start/End: Complemental strand, 27506838 - 27506730
Alignment:
291 tgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggttcaagtatgatat 390  Q
    |||||||||| ||||| |||||  | ||||| ||||||||||||| ||| || |||||||  | ||||||||||||  | |||||||| |||||||||||    
27506838 tgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaacaatggttggtttaagtatgatat 27506739  T
391 tgggatcac 399  Q
    |||||||||    
27506738 tgggatcac 27506730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 291 - 399
Target Start/End: Original strand, 27563346 - 27563454
Alignment:
291 tgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggttcaagtatgatat 390  Q
    |||||||||||||||| |||||  ||||||| ||||||||||| | ||| ||||||||| ||| ||| ||||||||  | | |||||||||||||||||     
27563346 tgcaaggaattgtgaggccacccattggatgatcatatccaaactcttcttcggcttgactcagcaaatcttgaaacaatgtttggttcaagtatgatac 27563445  T
391 tgggatcac 399  Q
     ||||||||    
27563446 ggggatcac 27563454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 292 - 395
Target Start/End: Original strand, 27478884 - 27478987
Alignment:
292 gcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggttcaagtatgatatt 391  Q
    ||||||||| ||||| |||||  | ||||| ||||||||||||| ||| || |||||||  | ||||||||||||  | |||||||||||||||||||||    
27478884 gcaaggaatggtgaggccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaacaatggttggttcaagtatgatatt 27478983  T
392 ggga 395  Q
    ||||    
27478984 ggga 27478987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 253 - 399
Target Start/End: Complemental strand, 27571801 - 27571655
Alignment:
253 attcaaacgagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattc 352  Q
    |||||| |||||||||| ||||| |||  | || || | |||||||||||||||||||||  ||||||| ||||||||||||| ||| || | ||||||     
27571801 attcaagcgagaagtaagatttaggaattcatcctcgccgcaaggaattgtgagaccacccattggatgatcatatccaaattcttcttctgattgattt 27571702  T
353 aacaattcttgaaatgacggttggttcaagtatgatattgggatcac 399  Q
    |  ||||||||||| || || ||| |||| ||||||| ||| |||||    
27571701 agtaattcttgaaacgatggctggctcaaatatgatactggaatcac 27571655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 238 - 335
Target Start/End: Original strand, 27507760 - 27507857
Alignment:
238 aagatgttagcacagattcaaacgagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaatt 335  Q
    |||||||||||||  | |||| |||||||| |||| ||||||||  ||||||   ||||||||||| ||||||||  |||||||||||||||||||||    
27507760 aagatgttagcacctactcaagcgagaagtgatatctaagaaaagatcttcttcacaaggaattgtaagaccacccattggatggtcatatccaaatt 27507857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 274 - 381
Target Start/End: Original strand, 27556362 - 27556469
Alignment:
274 taagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggt 373  Q
    ||||||| | ||||| ||||| |||||||||||||||||  | | ||| ||||||||||||| ||| || |||||||  |  |||||||||||||| |||    
27556362 taagaaagcatcttcactgcatggaattgtgagaccacccatagaatgatcatatccaaattcttcttctgcttgatgtagtaattcttgaaatgaaggt 27556461  T
374 tggttcaa 381  Q
    ||||||||    
27556462 tggttcaa 27556469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 278 - 387
Target Start/End: Complemental strand, 17970452 - 17970343
Alignment:
278 aaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggt 377  Q
    ||||| |||||| |||||||||||||||| |||||  ||||||| || ||||| |||| |||||| ||  || ||| ||| | ||||||||| | |||||    
17970452 aaaacatcttctgtgcaaggaattgtgaggccacccattggatgatcgtatccgaattcttcctctgcccgactcagcaagtattgaaatgaagtttggt 17970353  T
378 tcaagtatga 387  Q
    ||||||||||    
17970352 tcaagtatga 17970343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 274 - 399
Target Start/End: Original strand, 27419054 - 27419179
Alignment:
274 taagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggt 373  Q
    ||||||| | ||||| | |||||||||||| ||||||||  ||||||| ||||||||||||| ||| || | |||||| |  ||||||||||| || ||     
27419054 taagaaagcatcttcaccgcaaggaattgtaagaccacccattggatgatcatatccaaattcttcttctgattgatttagtaattcttgaaacgatggc 27419153  T
374 tggttcaagtatgatattgggatcac 399  Q
    ||| |||| ||||||| ||| |||||    
27419154 tggctcaaatatgatactggaatcac 27419179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 291 - 399
Target Start/End: Original strand, 27570049 - 27570157
Alignment:
291 tgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggttcaagtatgatat 390  Q
    |||||||||| ||||| |||||  | ||||| |||||||| || | |||||| |||||| ||| ||| ||||||||||| |||||| | ||||||||||     
27570049 tgcaaggaatggtgaggccacccatgggatgatcatatccgaactcttcctcagcttgactcagcaagtcttgaaatgaaggttggcttaagtatgatac 27570148  T
391 tgggatcac 399  Q
     ||||||||    
27570149 ggggatcac 27570157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 149
Target Start/End: Original strand, 27444523 - 27444642
Alignment:
21 caaataagtctcttcgtattatatttctgcgtataagtttaatttgcaatacaaattaactgaaaagtttcctaagcaagtcataatctctttgtttata 120  Q
    |||||| ||||||| ||||||||||||||| |||||||||     | ||||||| |||  |||||| |||| |||  |||||||||||||||||||        
27444523 caaatatgtctctttgtattatatttctgcatataagttt-----gtaatacaacttagttgaaaattttcgtaaataagtcataatctctttgtt---- 27444613  T
121 tataatcacctgactcagttgtttttcta 149  Q
     ||||||| || |||||||||||||||||    
27444614 cataatcatctcactcagttgtttttcta 27444642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 274 - 333
Target Start/End: Original strand, 27559223 - 27559282
Alignment:
274 taagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaa 333  Q
    ||||||| | ||||| |||||||||||||||||||||||  ||||||| |||||||||||    
27559223 taagaaagcatcttcactgcaaggaattgtgagaccacccattggatgatcatatccaaa 27559282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 389
Target Start/End: Complemental strand, 27420548 - 27420450
Alignment:
291 tgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggttcaagtatgata 389  Q
    |||||||||| ||||| |||||  | ||||| ||||||||||| | ||||||  ||||| ||| |||  |||||||||| |||||| ||||||||||||    
27420548 tgcaaggaatggtgaggccacccatgggatgatcatatccaaactcttcctcaacttgactcagcaagccttgaaatgaaggttggctcaagtatgata 27420450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 317 - 399
Target Start/End: Complemental strand, 27527275 - 27527193
Alignment:
317 ggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggttcaagtatgatattgggatcac 399  Q
    ||||| ||||||||||| | |||||| |||||| ||| ||| ||| |||| || |||||||| |||| |||||||||||||||    
27527275 ggatgatcatatccaaactcttcctcagcttgactcagcaactctagaaacgatggttggtttaagtgtgatattgggatcac 27527193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 261 - 387
Target Start/End: Original strand, 38028736 - 38028862
Alignment:
261 gagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattc 360  Q
    ||||||||||||  ||||||||||||||| |||||||||||||||| || ||  ||||||||||||||||||||| ||||||||||||| ||||||  |     
38028736 gagaagtaatatgcaagaaaacgtcttctgtgcaaggaattgtgaggccgcccattggatggtcatatccaaattcttcctcggcttgactcaacaggtt 38028835  T
361 ttgaaatgacggttggttcaagtatga 387  Q
    ||||||||| | |||||||||||||||    
38028836 ttgaaatgaagcttggttcaagtatga 38028862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 261 - 387
Target Start/End: Original strand, 38040051 - 38040177
Alignment:
261 gagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattc 360  Q
    ||||||||||||  ||||||||||||||| |||||||||||||||| || ||  |||||||||||||||| |||| ||||||||||||| ||||||  |     
38040051 gagaagtaatatgcaagaaaacgtcttctgtgcaaggaattgtgaggccgcccattggatggtcatatccgaattcttcctcggcttgactcaacaggtt 38040150  T
361 ttgaaatgacggttggttcaagtatga 387  Q
    ||||||||| | |||||||||||||||    
38040151 ttgaaatgaagcttggttcaagtatga 38040177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 261 - 386
Target Start/End: Original strand, 38036763 - 38036888
Alignment:
261 gagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattc 360  Q
    ||||||||||||  |||||||||| |||| |||||||||||||||| || ||  |||||||||||||||| |||| ||||||||||||| ||||||| |     
38036763 gagaagtaatatgcaagaaaacgtattctgtgcaaggaattgtgaggccgcccattggatggtcatatccgaattcttcctcggcttgactcaacaaatt 38036862  T
361 ttgaaatgacggttggttcaagtatg 386  Q
    ||||||||| | ||||||||||||||    
38036863 ttgaaatgaagcttggttcaagtatg 38036888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 260 - 399
Target Start/End: Complemental strand, 55084957 - 55084818
Alignment:
260 cgagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaatt 359  Q
    |||||||||||||  |||||||| |||||| |||||||||||||||| |||||  ||||||| || |||||||||| |||||| ||  || ||||||| |    
55084957 cgagaagtaatatgaaagaaaacatcttctgtgcaaggaattgtgaggccacccattggatgatcgtatccaaattcttcctccgcccgactcaacaagt 55084858  T
360 cttgaaatgacggttggttcaagtatgatattgggatcac 399  Q
    |||||||||| |||||||||||||| || || ||||||||    
55084857 cttgaaatgatggttggttcaagtaagacatagggatcac 55084818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 260 - 396
Target Start/End: Complemental strand, 50910131 - 50909995
Alignment:
260 cgagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaatt 359  Q
    ||||||||||| |  ||||| || |||||| |||||||||||||||| |||||  ||||||| ||||||||||||| ||||||  ||||||||||||| |    
50910131 cgagaagtaatttgcaagaagacatcttctgtgcaaggaattgtgaggccacccattggatgatcatatccaaattcttcctccacttgattcaacaagt 50910032  T
360 cttgaaatgacggttggttcaagtatgatattgggat 396  Q
     ||||||||| | ||||||||||||||| || |||||    
50910031 tttgaaatgaagcttggttcaagtatgacatggggat 50909995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 260 - 387
Target Start/End: Original strand, 38033744 - 38033875
Alignment:
260 cgagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgtt----ggatggtcatatccaaattgttcctcggcttgattcaac 355  Q
    |||||||||||||  |||||||| |||||| |||| ||||||||||  || ||  ||    ||||||||||||||||||| ||||||||||||| |||||    
38033744 cgagaagtaatatgcaagaaaacatcttctgtgcagggaattgtgatgccgcccattaattggatggtcatatccaaattcttcctcggcttgactcaac 38033843  T
356 aattcttgaaatgacggttggttcaagtatga 387  Q
    || | ||||||||| | |||||||||||||||    
38033844 aagttttgaaatgaagcttggttcaagtatga 38033875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 260 - 384
Target Start/End: Original strand, 50904761 - 50904885
Alignment:
260 cgagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaatt 359  Q
    |||||||| ||||  || ||||| ||||||||||||||||| ||||| |||||  ||||||| |||||||| ||||  ||||| ||| || ||||||| |    
50904761 cgagaagtgatatgcaaaaaaacctcttctctgcaaggaatggtgaggccacccattggatgatcatatccgaattcatcctctgctcgactcaacaagt 50904860  T
360 cttgaaatgacggttggttcaagta 384  Q
    |||||||||| | ||||||||||||    
50904861 cttgaaatgaagtttggttcaagta 50904885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 275 - 387
Target Start/End: Original strand, 50911853 - 50911965
Alignment:
275 aagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggtt 374  Q
    ||||||||  ||||| ||||||||||||| || |||||  |||| || ||||||||||||| |||||| |||||| ||||||| | ||||||||| | ||    
50911853 aagaaaacaccttctgtgcaaggaattgttaggccacccattgggtgatcatatccaaattcttcctctgcttgactcaacaagttttgaaatgaagctt 50911952  T
375 ggttcaagtatga 387  Q
    |||||||||||||    
50911953 ggttcaagtatga 50911965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 275 - 386
Target Start/End: Original strand, 48840696 - 48840806
Alignment:
275 aagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggtt 374  Q
    |||||||| |||||| |||||||||||||||| |||||  ||||||| ||||||||||||| || |||  ||| | ||||||| ||||||||||| | ||    
48840696 aagaaaacatcttctgtgcaaggaattgtgaggccacccattggatgatcatatccaaattctttctccactt-actcaacaagtcttgaaatgaggctt 48840794  T
375 ggttcaagtatg 386  Q
    ||||||||||||    
48840795 ggttcaagtatg 48840806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 260 - 396
Target Start/End: Original strand, 38024844 - 38024980
Alignment:
260 cgagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaatt 359  Q
    ||||||||||| |  | ||||| ||||||| |||||||||| ||||| |||||  |||| || ||||||||||||| |||||| |||||| |||| || |    
38024844 cgagaagtaatttccatgaaaatgtcttctgtgcaaggaatcgtgaggccacccattgggtgatcatatccaaattcttcctctgcttgactcaataagt 38024943  T
360 cttgaaatgacggttggttcaagtatgatattgggat 396  Q
     |||||| || | ||||||||||||||| || |||||    
38024944 tttgaaaggaagcttggttcaagtatgacatggggat 38024980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 260 - 396
Target Start/End: Original strand, 38031296 - 38031432
Alignment:
260 cgagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaatt 359  Q
    ||||||||||| |  | ||||| ||||||| |||||||||| ||||| |||||  |||| || ||||||||||||| |||||| |||||| |||| || |    
38031296 cgagaagtaatttccatgaaaatgtcttctgtgcaaggaatcgtgaggccacccattgggtgatcatatccaaattcttcctctgcttgactcaataagt 38031395  T
360 cttgaaatgacggttggttcaagtatgatattgggat 396  Q
     |||||| || | ||||||||||||||| || |||||    
38031396 tttgaaaggaagcttggttcaagtatgacatggggat 38031432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 291 - 399
Target Start/End: Complemental strand, 38044043 - 38043935
Alignment:
291 tgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggttcaagtatgatat 390  Q
    |||||||||||||||| || ||  ||||||| ||||||||||||| |||||| |||||| ||| ||| |||||||| || | ||| ||||||||||| ||    
38044043 tgcaaggaattgtgaggccgcccattggatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtttgattcaagtatgacat 38043944  T
391 tgggatcac 399  Q
     ||||||||    
38043943 agggatcac 38043935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 261 - 387
Target Start/End: Original strand, 21604724 - 21604850
Alignment:
261 gagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattc 360  Q
    ||||||||||||  ||||||||||||||| |||||||||||||||| || ||  |||||||||||||||| |||| ||||||| ||||| ||||||  |     
21604724 gagaagtaatatgcaagaaaacgtcttctgtgcaaggaattgtgaggccgcccattggatggtcatatcctaattcttcctcgtcttgactcaacatgtt 21604823  T
361 ttgaaatgacggttggttcaagtatga 387  Q
    ||||||||| | |||||||||||||||    
21604824 ttgaaatgaagcttggttcaagtatga 21604850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 396
Target Start/End: Original strand, 21607265 - 21607401
Alignment:
260 cgagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaatt 359  Q
    ||||||||||| |  | |||||  |||||| |||||||||  ||||| |||||  |||| || ||||||||||||| |||||| |||||| |||| || |    
21607265 cgagaagtaatttccatgaaaatatcttctgtgcaaggaaccgtgaggccacccattgggtgatcatatccaaattcttcctctgcttgactcaataagt 21607364  T
360 cttgaaatgacggttggttcaagtatgatattgggat 396  Q
     |||||| || | | ||||||||||||| || |||||    
21607365 tttgaaaggaagctcggttcaagtatgacatggggat 21607401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 275 - 366
Target Start/End: Complemental strand, 21634699 - 21634608
Alignment:
275 aagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaa 366  Q
    |||||||| |||||  |||||||||||||||  || ||  || |||| ||||||||||||| |||||| |||||| ||| ||| ||||||||    
21634699 aagaaaacatcttcggtgcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaa 21634608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 255 - 399
Target Start/End: Original strand, 1754206 - 1754349
Alignment:
255 tcaaacgagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaa 354  Q
    |||| |||||||| |||| |||||||| || |||||| |||||||| |||||||||||  | ||||| |||||| |||| |||||||| | ||  || |     
1754206 tcaagcgagaagtgatatctaagaaaaggt-ttctctacaaggaatagtgagaccacccatcggatgatcatattcaaactgttcctcagatttgtttag 1754304  T
355 caattcttgaaatgacggttggttcaagtatgatattgggatcac 399  Q
    ||||| ||||||||||| |||||||||||||||||  ||||||||    
1754305 caatttttgaaatgacgattggttcaagtatgatacggggatcac 1754349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 291 - 399
Target Start/End: Original strand, 1756757 - 1756865
Alignment:
291 tgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggttcaagtatgatat 390  Q
    |||||||||| ||||| |||||  | || || ||||||||||||| ||| || |||||| ||||||| | |||||| || ||||||||||||||||||||    
1756757 tgcaaggaatggtgaggccacccatggggtgatcatatccaaattcttcttcagcttgactcaacaagtattgaaacgatggttggttcaagtatgatat 1756856  T
391 tgggatcac 399  Q
    |||||||||    
1756857 tgggatcac 1756865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 261 - 389
Target Start/End: Complemental strand, 1759422 - 1759290
Alignment:
261 gagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgat----tcaaca 356  Q
    ||||||| |||| ||||||||| |||||||||||| |||| |||||||||||  |||||||||  ||| ||||||||||||| ||||| |    ||||||    
1759422 gagaagtgatatctaagaaaacttcttctctgcaaagaatggtgagaccacccattggatggttgtattcaaattgttcctcagcttgcttggctcaaca 1759323  T
357 attcttgaaatgacggttggttcaagtatgata 389  Q
    ||||||| ||||| | |||||| || |||||||    
1759322 attcttggaatgatgtttggtttaaatatgata 1759290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 262 - 399
Target Start/End: Complemental strand, 1754857 - 1754720
Alignment:
262 agaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattct 361  Q
    |||||| ||||||  ||| || |||||| ||||| |||| ||||| |||||  ||||||| ||||||||||| | |||| | |||||| |||||||   |    
1754857 agaagttatattttcgaagacatcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttccgcagcttgactcaacaaggat 1754758  T
362 tgaaatgacggttggttcaagtatgatattgggatcac 399  Q
    ||||| || ||||| |||||||||||||||||||||||    
1754757 tgaaacgatggttgattcaagtatgatattgggatcac 1754720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 278 - 387
Target Start/End: Complemental strand, 3073722 - 3073613
Alignment:
278 aaaacgtcttctctgcaaggaattgtgagaccacctgttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggt 377  Q
    ||||| |||||| |||||||||||||||| |||||  ||||||| || ||||| |||| |||||| ||  || ||| ||| | ||||||||| | |||||    
3073722 aaaacatcttctgtgcaaggaattgtgaggccacccattggatgatcgtatccgaattcttcctctgcccgactcagcaagtattgaaatgaagtttggt 3073623  T
378 tcaagtatga 387  Q
    ||||||||||    
3073622 tcaagtatga 3073613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University