View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15163_high_5 (Length: 740)

Name: NF15163_high_5
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15163_high_5
NF15163_high_5
[»] chr4 (1 HSPs)
chr4 (22-722)||(43704618-43705319)


Alignment Details
Target: chr4 (Bit Score: 581; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 22 - 722
Target Start/End: Original strand, 43704618 - 43705319
Alignment:
Q  22 atgagaaaaataatagtccatatattttcatatacgcccccaattgccacactgctctattgaaactgtaaggtagaagatacttgtgagatataatttg 121  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  43704618 atgagaaaaataatagtctatatattttcatatacgcccccaattgccacactgctctattgaaacggtaaggtagaagatacttgtgagatataatttg 43704717  T
Q  122 ggggcatattatacttttgtcatacaattatatactactgnnnnnnncaaatacgtgcaaagtgtgattgttaaagctcacttgtctcgtaaatatagct 221  Q
    ||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43704718 ggggcatattatacttttgtcatacaattatatactactgtttttttcaaatacgtgcaaagtgtgattgttaaagctcacttgtctcgtaaatatagct 43704817  T
Q  222 tagaaggtnnnnnnnnn-ggtctacatcgatatttaatatgttgtggtacatacaattatacacttctcggtacttatctttgtgtgagtttttcagtga 320  Q
    ||||||||          |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43704818 tagaaggtaaaaaaaaaaggtctacatcgatatttaatatgtcgtggtacatacaattatacacttctcggtacttatctttgtgtgagtttttcagtga 43704917  T
Q  321 gattctttaaagttaaaaacatattacagtgcacttaagcacaactgcactccgttaattcacagtagtaataaaatctgtagcatgattagaaaacata 420  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43704918 gattctttaaagttaaaaacatattacagtgcacttaagcacaactgcactccgttaattcacagtagtaataaaatctgtagcatgattagaaaacata 43705017  T
Q  421 acatatacatgctacaaatacttcnnnnnnnaaggaacttatggttcttcatgacataaactttgggtattggtcaacaaaagaaactttgggtttgcca 520  Q
    ||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43705018 acatatacatgctacaaatacttctttttttaaggaacttatggttcttcatgacataaactttgggtattggtcaacaaaagaaactttgggtttgcca 43705117  T
Q  521 ttgcacactcgcactcagcagtcattttaaacttcaagctccgcccccttatttgtacaacggtttaggcttctttttccgacgtcgaagtgaaaatact 620  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||    
T  43705118 ttgcacactcgcactcagcaatcattttaaacttcaagctccgcccccttgtttgtacaacggtttaggcttctttttccaacgtcgaagtgaaaacact 43705217  T
Q  621 atttaaaactcacacacacaactatgaggtatctgagtgaaaatgtgtgacttaactaatattacaattgctagctgagttatatcctacagacacaatt 720  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||    
T  43705218 atttaaaactcacacacaaaactatgaggtatctgagtgaaaatgtgtgacttaactaatattacaattgctagctgagttatatcctatgcacacaatt 43705317  T
Q  721 ta 722  Q
    ||    
T  43705318 ta 43705319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University