View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15163_high_51 (Length: 381)
Name: NF15163_high_51
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_high_51 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 179 - 381
Target Start/End: Complemental strand, 5316325 - 5316122
Alignment:
| Q |
179 |
caatattataatctgcaagaagagcacatatata-ttttttgaacaatatattatattactacatttaaaatataattcattagttacaaacatcttcat |
277 |
Q |
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| T |
5316325 |
caatattataatctgcaagaagagcacatattttgttttttgaacaatatattatattactacatttaaaatataattcattagttacaaacatcttcat |
5316226 |
T |
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| Q |
278 |
cgtctttaacatgttaacgccattttcttcttaattataaatgatattttgtcaaataattaaagagctattgttagaatatacagctaatttgttataa |
377 |
Q |
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| T |
5316225 |
cgtctctaacatgttaacaccattttcttcttaattataaatgatattttgtcaaataattaaagagctattgttagaatatacagctaatttgttataa |
5316126 |
T |
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| Q |
378 |
aaat |
381 |
Q |
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|||| |
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| T |
5316125 |
aaat |
5316122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 5316490 - 5316411
Alignment:
| Q |
17 |
aatatcaaatacaaagcaatatttcttataacatagttcaagcagcaaatataatagagccatcattcaccagcattata |
96 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
5316490 |
aatatcaaatacaaagcaatatttcttataacatagttcaaccagcaaatataatagagccatcattcaccagcattata |
5316411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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