View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15163_high_53 (Length: 366)
Name: NF15163_high_53
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_high_53 |
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Alignment Details
Target: chr6 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 15 - 349
Target Start/End: Original strand, 14091407 - 14091741
Alignment:
| Q |
15 |
ttattctgaaataataccctcttatttggacaatttgctttaaaatgtccaagctcaccacatttaaaacatgttctttccgcaggagctctagattttg |
114 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14091407 |
ttattctgaaataataccctcttatttggataatttgctttaaaatgtccaagctcaccacatttaaaacatgttctttccgcaggagctctagattttg |
14091506 |
T |
|
| Q |
115 |
atctagacttccttcccctgccttgtcctctttcattggtcctccctctagtagcaaacaatccttgagcttgttccctatgttctcttccactgctaga |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14091507 |
atctagacttccttcccctgccttgtcctctttcattggtcctccctctagtagcaaacaatccttgagcttgttccctatgttctcttccactgctaga |
14091606 |
T |
|
| Q |
215 |
catcccgcttgtagcaacctttcgaagatcatccgctaaaagtgatgttctagtctcatccatggttagagtatcacccacaagcatcaatgtttgaact |
314 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
14091607 |
catcccgcttgtagcaacctttcgaagatcatccgctaaaagtgatgttctagtctcatccatggttagagtatcacccacaagcatcaatgtttgtact |
14091706 |
T |
|
| Q |
315 |
agattttcgtaagactctggtaatgaaagcaataa |
349 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
14091707 |
agattttcgtaagactctggtaatgaaagcaataa |
14091741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 15 - 350
Target Start/End: Original strand, 24880137 - 24880472
Alignment:
| Q |
15 |
ttattctgaaataataccctcttatttggacaatttgctttaaaatgtccaagctcaccacatttaaaacatgttctttccgcaggagctctagattttg |
114 |
Q |
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|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24880137 |
ttattctgaaataataccctcttatttggataatttgctttaaaatgtccaagctcaccacatttaaaacatgttctttccgcaggagctctagattttg |
24880236 |
T |
|
| Q |
115 |
atctagacttccttcccctgccttgtcctctttcattggtcctccctctagtagcaaacaatccttgagcttgttccctatgttctcttccactgctaga |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24880237 |
atctagacttccttcccctgccttgtcctctttcattggtcctccctctagtagcaaacaatccttgagcttgttccctatgttctcttccactgctaga |
24880336 |
T |
|
| Q |
215 |
catcccgcttgtagcaacctttcgaagatcatccgctaaaagtgatgttctagtctcatccatggttagagtatcacccacaagcatcaatgtttgaact |
314 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24880337 |
catcccgcttgtagtaacctttcgaagatcatccgctaaaagtgatgttcttgtctcatccatggttagagtatcacccacaagcatcaatgtttgaact |
24880436 |
T |
|
| Q |
315 |
agattttcgtaagactctggtaatgaaagcaataac |
350 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||| |
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|
| T |
24880437 |
agattttcgttagactctggtaatgaaagcaataac |
24880472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 15 - 350
Target Start/End: Complemental strand, 46455079 - 46454744
Alignment:
| Q |
15 |
ttattctgaaataataccctcttatttggacaatttgctttaaaatgtccaagctcaccacatttaaaacatgttctttccgcaggagctctagattttg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
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|
| T |
46455079 |
ttattctgaaataataccctcttatttggacaatttgctttaaaatgtccaagctcaccacattaaaaacatgttttttccgcaggagctctagattttg |
46454980 |
T |
|
| Q |
115 |
atctagacttccttcccctgccttgtcctctttcattggtcctccctctagtagcaaacaatccttgagcttgttccctatgttctcttccactgctaga |
214 |
Q |
| |
|
|| || ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
46454979 |
atatatgcttccttcccctgccttgtcctctttcattggttctccctctagtagaaaacaatccttgagcttgttctttatgttctcttccactgctaga |
46454880 |
T |
|
| Q |
215 |
catcccgcttgtagcaacctttcgaagatcatccgctaaaagtgatgttctagtctcatccatggttagagtatcacccacaagcatcaatgtttgaact |
314 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46454879 |
catcccgcttgtagcaaccttttgaagatcattcgctaaaagtgatgttctagtctcatccatggttagagtatcacccacaagcatcaatgtttgaact |
46454780 |
T |
|
| Q |
315 |
agattttcgtaagactctggtaatgaaagcaataac |
350 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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|
| T |
46454779 |
agattttcgtaagactctggtaatgaaagcaataac |
46454744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 287 - 343
Target Start/End: Complemental strand, 10050263 - 10050207
Alignment:
| Q |
287 |
atcacccacaagcatcaatgtttgaactagattttcgtaagactctggtaatgaaag |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
10050263 |
atcacccacaagcatcaatgtttgaactagattttcgtaagactctggtactgaaag |
10050207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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