View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15163_high_59 (Length: 344)
Name: NF15163_high_59
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_high_59 |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 20 - 329
Target Start/End: Original strand, 1208951 - 1209258
Alignment:
| Q |
20 |
acaacctagtcatcgttttcatcatcaatcattatttctcttgctaccatcattctcaaatttagaaaataattaacaagctaataatatgcttaaccat |
119 |
Q |
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| T |
1208951 |
acaacctagtcatcgttttcatcatcaatcattatttctcttgctaccatcattctcaaatttagaaaataattaacaagctaataatatgcttaaccat |
1209050 |
T |
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| Q |
120 |
caattataactataaatattaatttagtttatcttctaatcttcaacactagagaccaaaaaacaaaacattagtatataccactctcattcttctgttt |
219 |
Q |
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| T |
1209051 |
caattataactataaatattaatttagtttatcttctaatcttcaacact--agaccaagaaacaaaacattagtatataacactctcattcttctgttt |
1209148 |
T |
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| Q |
220 |
cttctattgattgaatagaaaaacacatcaacatgagaattgatcaagaaagtggtgctgtttcatcttctagaaaacatcttgtttttgcttattacat |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1209149 |
cttctattgattgaatagaaaaacacatcaacatgagaattgatcaagaaagtggtgctgtttcatcttctagaaaacatcttgtttttgcttattacat |
1209248 |
T |
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| Q |
320 |
tactggtcat |
329 |
Q |
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|||||||||| |
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| T |
1209249 |
tactggtcat |
1209258 |
T |
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