View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15163_high_61 (Length: 340)
Name: NF15163_high_61
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_high_61 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 8816402 - 8816725
Alignment:
| Q |
1 |
atgtatggacagagtattatctatcaacaaaagagcttttactttctcnnnnnnnnnnnnnnngatgtcttactttctcttgtcttggttgcatagacca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
8816402 |
atgtatggacagagtattatctatcaacaaaagagcttttactttctcaaaaaacaaaaaaaagatgtcttactttctcttgtcttggttgaatagacca |
8816501 |
T |
|
| Q |
101 |
tgtggaccagaaagaaaagagtgctggaaagcatttactatgcatcatatttatctattattacaaatcgaaacactaataaagccgttctggtatagag |
200 |
Q |
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|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
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| T |
8816502 |
tgtggatcagaaagaaaagagtgctggaaagcattgactatgcatcatatttatctattattacaaatcgaaacactaataaagccgttctg--atatag |
8816599 |
T |
|
| Q |
201 |
acttaggcacaattagtcgaaatctatggttatatgcttgtggctaagttacacaatagaatagtgttaagaatatataagtgcccgattgcactgccac |
300 |
Q |
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||||| |||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||| | ||| ||||| ||| |||||| ||||| |
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| T |
8816600 |
acttaagcacaattagtcgaaatctatgattatctacttgtggctaagttacacaatagaatagtgttaagtacatacaagtggccggttgcaccgccac |
8816699 |
T |
|
| Q |
301 |
attaattctaacattcttgcctcacc |
326 |
Q |
| |
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||| |||||||||| |||| |||||| |
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| T |
8816700 |
atttattctaacatccttgtctcacc |
8816725 |
T |
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