View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15163_high_63 (Length: 333)
Name: NF15163_high_63
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_high_63 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 44788032 - 44788348
Alignment:
| Q |
1 |
tataagccatcctttcctttgtataaactatgttacaatgggtccaaatacacaaccctactatcgtaagcttactcaaaatcagttattcgtggctttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44788032 |
tataagccatcctttcctttgtataaactatgttacaatgggtcaaaatacacaaccctactatcgtaagcttactcaaaatcagttattcgtggctttg |
44788131 |
T |
|
| Q |
101 |
ttctcatctatatggaactgagaaaaccaaacaatgatgaaagtacaactctaatatttctcgcaagaatgatatgaatgaaaaacagaaacaaaaccta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44788132 |
ttctcatctatatggaactgagaaaaccaaacaatgataaaagtacaactctaatatttctcgcaagaatgatatgaatgaaaaacagaaacaaaaccta |
44788231 |
T |
|
| Q |
201 |
atagagggagttttctacctcaaaagtttcgtatatgctcttctgtcatttgtactcagtttcacattttactgataaagggaatatatttggtatgacg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
44788232 |
atagagggagttttctacctcaaaagtttcgtatatgctcttctgtcatttgttctcagtttcacattttagtgataaaggaaatatatttggtatgacg |
44788331 |
T |
|
| Q |
301 |
tccctgagcaaaaattt |
317 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
44788332 |
tccctgagcaaaaattt |
44788348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 203 - 317
Target Start/End: Original strand, 44786556 - 44786670
Alignment:
| Q |
203 |
agagggagttttctacctcaaaagtttcgtatatgctcttctgtcatttgtactcagtttcacattttactgataaagggaatatatttggtatgacgtc |
302 |
Q |
| |
|
|||||||||||||||||||||| | || || | ||||||| | ||| | |||||||||||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
44786556 |
agagggagttttctacctcaaatatgtcataattcctcttctatactttattctcagtttcacattttactgataaagggtatatatttggtatgacgcc |
44786655 |
T |
|
| Q |
303 |
cctgagcaaaaattt |
317 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
44786656 |
cctgagcaaaaattt |
44786670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 259 - 314
Target Start/End: Original strand, 44791978 - 44792033
Alignment:
| Q |
259 |
gtttcacattttactgataaagggaatatatttggtatgacgtccctgagcaaaaa |
314 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||||| || |||||||||| |
|
|
| T |
44791978 |
gtttcacattttacttacaaagggaatatatttggtatgacgcccttgagcaaaaa |
44792033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 261 - 317
Target Start/End: Original strand, 44799934 - 44799990
Alignment:
| Q |
261 |
ttcacattttactgataaagggaatatatttggtatgacgtccctgagcaaaaattt |
317 |
Q |
| |
|
||||||||||||||| |||||||| ||| ||||||||||| || ||||||||||||| |
|
|
| T |
44799934 |
ttcacattttactgacaaagggaagatacttggtatgacgcccttgagcaaaaattt |
44799990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 44783655 - 44783714
Alignment:
| Q |
255 |
ctcagtttcacattttactgataaagggaatatatttggtatgacgtccctgagcaaaaa |
314 |
Q |
| |
|
||||||||||||||||||| ||| || || |||| ||||||||||||| |||||||||| |
|
|
| T |
44783655 |
ctcagtttcacattttactagtaatggaaagatatgtggtatgacgtccatgagcaaaaa |
44783714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 200 - 317
Target Start/End: Complemental strand, 36681470 - 36681354
Alignment:
| Q |
200 |
aatagagggagttttctacctcaaaagtttcgtatatgctcttctgtcatttgtactcagtttcacattttactgataaagggaatatatttggtatgac |
299 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36681470 |
aatagagggagttttctacctcaaaa-tttcgtatatcctcttctgtcctttgttctcagtttcacattttactgataaagggaatatatttggtatgac |
36681372 |
T |
|
| Q |
300 |
gtccctgagcaaaaattt |
317 |
Q |
| |
|
| ||| |||||||||||| |
|
|
| T |
36681371 |
gcccccgagcaaaaattt |
36681354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 36681610 - 36681503
Alignment:
| Q |
1 |
tataagccatcctttcctttgtataa------actatgttacaatgggtccaaatacacaaccctactatcgtaagcttactcaaaatcagttattcgtg |
94 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
36681610 |
tataagccatcctctcctttgtataactttaaactatgttacaatgggtccaaatacacaaccctactattgtaaggttactcaaaatcagttattcgtg |
36681511 |
T |
|
| Q |
95 |
gctttgtt |
102 |
Q |
| |
|
|||||||| |
|
|
| T |
36681510 |
gctttgtt |
36681503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University