View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15163_high_64 (Length: 333)
Name: NF15163_high_64
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_high_64 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 16 - 309
Target Start/End: Complemental strand, 55061109 - 55060815
Alignment:
| Q |
16 |
atgaacttgaagaatctggttcaattttcaacactacttctgatactgaagttttgcttcatcttattgcaacttcaaatcatagacctttt-atagcga |
114 |
Q |
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| T |
55061109 |
atgaacttgaagaatctggttcaattttcaacactacttctgatactgaagttttgcttcatcttattgcaacttcaaatcatagacctttttatagcga |
55061010 |
T |
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| Q |
115 |
taattgttgaagcgtgtgaaaaagttaaaggtgcttattcaattgtgtttgttactaaagataaacttgttgttgtcagagatccttttggttttcgacc |
214 |
Q |
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| T |
55061009 |
gaattgttgaagcgtgtgaaaaagttaaaggtgcttattcaattgtgtttgttactgaagataaactttttgttgtcagagatccttttggttttcgacc |
55060910 |
T |
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| Q |
215 |
tctggttatgggaagaagaagtaatagttctgttgtttttgcttcggaaacatgtgcacttgatttgattgaagctacttatgaaagagaggttt |
309 |
Q |
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| T |
55060909 |
tctggttatgggaagaagaagtaatagttctgttgtttttgcttcggaaacatgtgcacttgatttgattgaagctacttatgaaagagaggttt |
55060815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 33 - 298
Target Start/End: Complemental strand, 27357275 - 27357010
Alignment:
| Q |
33 |
ggttcaattttcaacactacttctgatactgaagttttgcttcatcttattgcaacttcaaatcatagaccttttatagcgataattgttgaagcgtgtg |
132 |
Q |
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| T |
27357275 |
ggttcgatttttaacactacttctgatactgaagttgttcttcatttgattgctacttcaaagcatagaccttttattttaagaattgttgatgcatgtg |
27357176 |
T |
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| Q |
133 |
aaaaagttaaaggtgcttattcaattgtgtttgttactaaagataaacttgttgttgtcagagatccttttggttttcgacctctggttatgggaagaag |
232 |
Q |
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| T |
27357175 |
agaagcttgaaggtgcttattcgattgtgtttgttactgaggataagcttgttgctgtgagggatccatttgggtttaggcctttggttatggggaggag |
27357076 |
T |
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| Q |
233 |
aagtaatagttctgttgtttttgcttcggaaacatgtgcacttgatttgattgaagctacttatga |
298 |
Q |
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| T |
27357075 |
aagtaatggtgctgttgtttttgcttctgagacttgtgctcttgatttgattgaagctacttatga |
27357010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 256
Target Start/End: Complemental strand, 44334166 - 44334066
Alignment:
| Q |
160 |
tgtttgttactaaagataaac---ttgttgttgtcagag-atccttttggttttcgacctctggttatgggaagaagaagtaatagttctgttgtttttg |
255 |
Q |
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||||||||||| ||||||||| |||||| | |||||| |||||||| ||||||||||| |||||||| |||| || ||||| ||||||| ||||||| |
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| T |
44334166 |
tgtttgttactgaagataaacaacttgttgctatcagaggatcctttttgttttcgacctttggttatgtgaagtagtagtaacggttctgtagtttttg |
44334067 |
T |
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| Q |
256 |
c |
256 |
Q |
| |
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| T |
44334066 |
c |
44334066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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