View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15163_high_66 (Length: 331)
Name: NF15163_high_66
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_high_66 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 15 - 314
Target Start/End: Complemental strand, 39763898 - 39763599
Alignment:
| Q |
15 |
aagaactagaatttaagaaggaacttaaaaggttagacgaatatgtagtggcattgaagggtgaaatgatggataaggagacaacactgcaaaacatatc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39763898 |
aagaactagaatttaagaaggaacttaaaaggttagacgaatatgtagtggcattgaagggtgaaatgatggataaggagacaacactgcaaaacatatc |
39763799 |
T |
|
| Q |
115 |
agaagaaaatgaaatgttgaagtgggaaatcaataagaggttcacattcacacatgatggtataatgaaagaggaagttgcagccgaaataggggcggct |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39763798 |
agaagaaaatgaaatgttgaagtgggaaatcaataagaggttcacattcacacatgatggcataatgaaagaggaagttgcagccgaaataggggcggct |
39763699 |
T |
|
| Q |
215 |
aaggctgcagaacgcgatgctattgctaaattgaagataatgaaggaggaggcagagaagagcagtagtaaggcggcgaaggtggctgagcagttggaag |
314 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
39763698 |
aaggctgcagaacgtgatgctattgctaaattgaagataatgaaggaggaggcagagaagagcagtagtaaggcggcgagggtggctgagcagttggaag |
39763599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 147 - 314
Target Start/End: Complemental strand, 39754806 - 39754637
Alignment:
| Q |
147 |
ataagaggttcacattcacacatgatggtataatgaaagaggaagttgcagccgaaataggggcggctaaggctgcagaacgcgatgctat--tgctaaa |
244 |
Q |
| |
|
|||| ||||||||||||||||||| || ||| ||| || ||||||| |||||||||||||||| |||||||||||||||||||||| | ||| | |
|
|
| T |
39754806 |
ataacaggttcacattcacacatgctgatatggtgagggaagaagttgtggccgaaataggggcggttaaggctgcagaacgcgatgctttcttgcaact |
39754707 |
T |
|
| Q |
245 |
ttgaagataatgaaggaggaggcagagaagagcagtagtaaggcggcgaaggtggctgagcagttggaag |
314 |
Q |
| |
|
| |||||||||||||||||||||||||||||| |||||||| || || |||||||||||||||||||| |
|
|
| T |
39754706 |
attcagataatgaaggaggaggcagagaagagcaatagtaaggtggtgagggtggctgagcagttggaag |
39754637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 28 - 170
Target Start/End: Complemental strand, 39746797 - 39746656
Alignment:
| Q |
28 |
taagaaggaacttaaaaggttagacgaatatgtagtggcattgaagggtgaaatgatggataaggagacaacactgcaaaacatatcagaagaaaatgaa |
127 |
Q |
| |
|
||||||| ||||||||||||| || |||||||| | || ||||||||||| ||||||||||||||||||| |||||| ||| | ||||| |||||| |
|
|
| T |
39746797 |
taagaagcaacttaaaaggtttgatgaatatgtggcggtgcagaagggtgaaacgatggataaggagacaacaatgcaaagaata-ctgaagagaatgaa |
39746699 |
T |
|
| Q |
128 |
atgttgaagtgggaaatcaataagaggttcacattcacacatg |
170 |
Q |
| |
|
|| |||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
39746698 |
attctgaagttggaaatcaataataggttcacattcacacatg |
39746656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 113
Target Start/End: Complemental strand, 39754896 - 39754805
Alignment:
| Q |
22 |
agaatttaagaaggaacttaaaaggttagacgaatatgtagtggcattgaagggtgaaatgatggataaggagacaacactgcaaaacatat |
113 |
Q |
| |
|
|||| |||| ||||| ||||||||||| ||| ||||||| | || ||||||||||||| |||||||||||||||| ||| |||||| ||||| |
|
|
| T |
39754896 |
agaacttaacaaggagcttaaaaggttggacaaatatgtggcggtattgaagggtgaattgatggataaggagaccacattgcaaagcatat |
39754805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University