View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15163_high_68 (Length: 329)
Name: NF15163_high_68
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_high_68 |
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| [»] scaffold0419 (1 HSPs) |
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| [»] scaffold0277 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 321
Target Start/End: Original strand, 32777308 - 32777611
Alignment:
| Q |
18 |
catagttggtggcttctttgacccttcaaaatcaaaagatagagaggaaatggcagaaataaaaaagatgcatgatttaattgaaaaatatcaactaaag |
117 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32777308 |
catagttggtggcttctttgacccatcaaaatcaaaagatagagaggaaatggcagaaataaaaaagatgcatgatttaattgaaaaatatcaactaaag |
32777407 |
T |
|
| Q |
118 |
ggccaattcagatggattgctgcgcagactgatcgatatcgtaacggagagctttatcgatgcattgccgacacaaagggagcttttgtgcagcctgctt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32777408 |
ggccaattcagatggattgctgcgcagactgatcgatatcgtaacggagagctctatcgatgcattgccgacacaaagggagcttttgtgcagcctgctt |
32777507 |
T |
|
| Q |
218 |
tgtatgaagcatttggtttaactgtcattgaagcaatgaactgtggcttgccaacttttgctactaatcaaggaggtccagcagaaataattgttgatga |
317 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32777508 |
tgtatgaagcatttggcttaactgtcattgaagcaatgaactgtggcttgccaacttttgctactaatcaaggaggtccagcagaaataattgttgatgg |
32777607 |
T |
|
| Q |
318 |
tgtc |
321 |
Q |
| |
|
|||| |
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|
| T |
32777608 |
tgtc |
32777611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 18 - 316
Target Start/End: Complemental strand, 29117898 - 29117600
Alignment:
| Q |
18 |
catagttggtggcttctttgacccttcaaaatcaaaagatagagaggaaatggcagaaataaaaaagatgcatgatttaattgaaaaatatcaactaaag |
117 |
Q |
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||||||||| ||||||||||| |||| ||||||||||| || || || ||||||||||||| ||| |||||||||||||||||||| |||||| | ||| |
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| T |
29117898 |
catagttggaggcttctttgatcctttgaaatcaaaagacagggaagagatggcagaaataagaaaaatgcatgatttaattgaaaagtatcaattgaag |
29117799 |
T |
|
| Q |
118 |
ggccaattcagatggattgctgcgcagactgatcgatatcgtaacggagagctttatcgatgcattgccgacacaaagggagcttttgtgcagcctgctt |
217 |
Q |
| |
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|| ||||| |||||||||| ||| ||||| ||| || |||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
29117798 |
ggtcaatttagatggattgttgcacagaccgatagacatcgcaacggagagctttatcgatttattgccgacacaaagggagcatttgtgcagcctgctt |
29117699 |
T |
|
| Q |
218 |
tgtatgaagcatttggtttaactgtcattgaagcaatgaactgtggcttgccaacttttgctactaatcaaggaggtccagcagaaataattgttgatg |
316 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| || || |||||||||||||| |||||||||| |
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| T |
29117698 |
tgtatgaagcatttggtctaactgtcattgaagcaatgaactgtggtttgccaacttttgctactaaccatggtggtccagcagaaattattgttgatg |
29117600 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0419 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold0419
Description:
Target: scaffold0419; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 124 - 314
Target Start/End: Original strand, 12875 - 13065
Alignment:
| Q |
124 |
ttcagatggattgctgcgcagactgatcgatatcgtaacggagagctttatcgatgcattgccgacacaaagggagcttttgtgcagcctgctttgtatg |
223 |
Q |
| |
|
|||||||||||||| || || |||||||||||||| || ||||||||||| ||||| || || || ||||| ||||||||||| || || || ||||||| |
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| T |
12875 |
ttcagatggattgcggctcaaactgatcgatatcgcaatggagagctttaccgatgtatcgcggatacaaaaggagcttttgttcaaccagcattgtatg |
12974 |
T |
|
| Q |
224 |
aagcatttggtttaactgtcattgaagcaatgaactgtggcttgccaacttttgctactaatcaaggaggtccagcagaaataattgttga |
314 |
Q |
| |
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|||| |||||| |||| ||||||||||||||||||||||| || ||||||||||| || |||||||| |||||||| ||||| || ||||| |
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| T |
12975 |
aagcttttggtctaacagtcattgaagcaatgaactgtggattaccaacttttgcaacaaatcaaggtggtccagctgaaatcatagttga |
13065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0277 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: scaffold0277
Description:
Target: scaffold0277; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 124 - 314
Target Start/End: Complemental strand, 8467 - 8277
Alignment:
| Q |
124 |
ttcagatggattgctgcgcagactgatcgatatcgtaacggagagctttatcgatgcattgccgacacaaagggagcttttgtgcagcctgctttgtatg |
223 |
Q |
| |
|
|||||||||||||| || || |||||||||||||| || ||||||||||| ||||| || || || ||||| ||||||||||| || || || ||||||| |
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| T |
8467 |
ttcagatggattgcggctcaaactgatcgatatcgcaatggagagctttaccgatgtatcgcggatacaaaaggagcttttgttcaaccagcattgtatg |
8368 |
T |
|
| Q |
224 |
aagcatttggtttaactgtcattgaagcaatgaactgtggcttgccaacttttgctactaatcaaggaggtccagcagaaataattgttga |
314 |
Q |
| |
|
|||| |||||| |||| ||||||||||||||||||||||| || ||||||||||| || |||||||| |||||||| ||||| || ||||| |
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| T |
8367 |
aagcttttggtctaacagtcattgaagcaatgaactgtggattaccaacttttgcaacaaatcaaggtggtccagctgaaatcatagttga |
8277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0277; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 124 - 278
Target Start/End: Complemental strand, 17217 - 17063
Alignment:
| Q |
124 |
ttcagatggattgctgcgcagactgatcgatatcgtaacggagagctttatcgatgcattgccgacacaaagggagcttttgtgcagcctgctttgtatg |
223 |
Q |
| |
|
|||||||||||||| || || ||||||| |||||| || ||||||||||| ||||| || || || |||| ||||||||||| || || || ||||||| |
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| T |
17217 |
ttcagatggattgcggctcaaactgatcaatatcgcaatggagagctttaccgatgtatcgcggatacaacaggagcttttgttcaaccagcattgtatg |
17118 |
T |
|
| Q |
224 |
aagcatttggtttaactgtcattgaagcaatgaactgtggcttgccaacttttgc |
278 |
Q |
| |
|
|||| |||||| |||| ||||||| ||||||||||||||| || ||||||||||| |
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| T |
17117 |
aagcttttggtctaacagtcattgcagcaatgaactgtggattaccaacttttgc |
17063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 22 - 316
Target Start/End: Original strand, 28799425 - 28799719
Alignment:
| Q |
22 |
gttggtggcttctttgacccttcaaaatcaaaagatagagaggaaatggcagaaataaaaaagatgcatgatttaattgaaaaatatcaactaaagggcc |
121 |
Q |
| |
|
||||| || ||||| || || |||||||| ||||||||||| |||| | |||||| || ||||||||| | || || || |||| |||| | || | |
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|
| T |
28799425 |
gttggaggattcttcgatccgtcaaaatccaaagatagagaagaaacagaagaaatcaagaagatgcattacttgatgaaagaatacaaactgcaaggtc |
28799524 |
T |
|
| Q |
122 |
aattcagatggattgctgcgcagactgatcgatatcgtaacggagagctttatcgatgcattgccgacacaaagggagcttttgtgcagcctgctttgta |
221 |
Q |
| |
|
| |||||||||||||| ||||| ||||| ||||||| |||||||||||||| ||||| || || || ||||| ||||||||||| || || || ||||| |
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|
| T |
28799525 |
agttcagatggattgcggcgcaaactgacagatatcgcaacggagagctttaccgatgtatcgcggatacaaaaggagcttttgttcaaccagcattgta |
28799624 |
T |
|
| Q |
222 |
tgaagcatttggtttaactgtcattgaagcaatgaactgtggcttgccaacttttgctactaatcaaggaggtccagcagaaataattgttgatg |
316 |
Q |
| |
|
|||||| |||||| |||| || |||||||||||||||||||| || ||||||||||| || |||||||| |||||||| ||||| || ||||||| |
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|
| T |
28799625 |
tgaagcttttggtctaacagtgattgaagcaatgaactgtggattaccaacttttgcaacaaatcaaggtggtccagctgaaattatagttgatg |
28799719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 124 - 316
Target Start/End: Original strand, 28783838 - 28784030
Alignment:
| Q |
124 |
ttcagatggattgctgcgcagactgatcgatatcgtaacggagagctttatcgatgcattgccgacacaaagggagcttttgtgcagcctgctttgtatg |
223 |
Q |
| |
|
|||||||||||||| ||||| ||||| ||||||| |||||||||||||| ||||| || || || ||||| ||||||||||| || || || ||||||| |
|
|
| T |
28783838 |
ttcagatggattgcagcgcaaactgacagatatcgcaacggagagctttaccgatgtatcgcggatacaaaaggagcttttgttcaaccagcattgtatg |
28783937 |
T |
|
| Q |
224 |
aagcatttggtttaactgtcattgaagcaatgaactgtggcttgccaacttttgctactaatcaaggaggtccagcagaaataattgttgatg |
316 |
Q |
| |
|
|||| |||||| |||| || |||||||||||||||||||| || ||||||||||| || |||||||| |||||||| ||||| || ||||||| |
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|
| T |
28783938 |
aagcttttggtctaacagtgattgaagcaatgaactgtggattaccaacttttgcaacaaatcaaggtggtccagctgaaattatagttgatg |
28784030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 22 - 314
Target Start/End: Original strand, 28777721 - 28778013
Alignment:
| Q |
22 |
gttggtggcttctttgacccttcaaaatcaaaagatagagaggaaatggcagaaataaaaaagatgcatgatttaattgaaaaatatcaactaaagggcc |
121 |
Q |
| |
|
||||| || ||||| || ||||||||||| |||||||| || |||| | |||||| || ||||||||| | || || || |||| |||| | || | |
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|
| T |
28777721 |
gttggaggattcttcgatccttcaaaatccaaagatagcgaagaaacagaagaaatcaagaagatgcattacttgatgaaagaatacaaactgcaaggtc |
28777820 |
T |
|
| Q |
122 |
aattcagatggattgctgcgcagactgatcgatatcgtaacggagagctttatcgatgcattgccgacacaaagggagcttttgtgcagcctgctttgta |
221 |
Q |
| |
|
| ||||||||||||||||| || |||||| |||||| || ||||||||||| ||||| || || || ||||| ||||||||||| || || || ||||| |
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|
| T |
28777821 |
agttcagatggattgctgctcaaactgattgatatctcaatggagagctttaccgatgtatcgcggatacaaaaggagcttttgttcaaccagcattgta |
28777920 |
T |
|
| Q |
222 |
tgaagcatttggtttaactgtcattgaagcaatgaactgtggcttgccaacttttgctactaatcaaggaggtccagcagaaataattgttga |
314 |
Q |
| |
|
|||||| |||||| |||| || |||||||||||||||||||| || ||||||||||| || |||||||| |||||||| ||||| || ||||| |
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|
| T |
28777921 |
tgaagcttttggtctaacagttattgaagcaatgaactgtggattaccaacttttgcaacaaatcaaggtggtccagctgaaatcatagttga |
28778013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 160 - 269
Target Start/End: Complemental strand, 19152929 - 19152820
Alignment:
| Q |
160 |
aacggagagctttatcgatgcattgccgacacaaagggagcttttgtgcagcctgctttgtatgaagcatttggtttaactgtcattgaagcaatgaact |
259 |
Q |
| |
|
|||||||||||||| || |||| ||||||||||||||||||||||||||||||| | |||||||| |||||||| ||||| ||||||| |||| | |
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|
| T |
19152929 |
aacggagagctttaccgtgtcatttgcgacacaaagggagcttttgtgcagcctgctatttatgaagcttttggtttgactgttgttgaagctatgactt |
19152830 |
T |
|
| Q |
260 |
gtggcttgcc |
269 |
Q |
| |
|
|||| ||||| |
|
|
| T |
19152829 |
gtggattgcc |
19152820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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