View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15163_high_7 (Length: 694)
Name: NF15163_high_7
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 156 - 533
Target Start/End: Original strand, 46249091 - 46249489
Alignment:
| Q |
156 |
taaccttattagcatcaaacaatgtaaacataattatcaatacataaaacaggaaaagataaaagagttagagttaattatttaccttgacaggggaggg |
255 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46249091 |
taaccttattagcatcaaacaatgtaaacataattatcaatacataaaacaagaaaagataaaagagttagagttaattatttaccttgacaggggaggg |
46249190 |
T |
|
| Q |
256 |
atactccacaaagagtaagcaagttggccgtgtttgtggcatcgaaaggtaaattgtcgatttcttccaatttaatatcacaaatgcaaccggaagaagt |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
46249191 |
atactccacaaagagtaagcaagttggccgtgtttgtggcatcgaaaggtaaattgtcgatttcttccaatttaatatcacaaatgcaaccgtaagaagt |
46249290 |
T |
|
| Q |
356 |
agttataatatattcaatagcagaacaacatgaatcatattgttgtgaa---------------------ttacactccccaatcatatcagttataatt |
434 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||| || ||||| ||||||||||| |||||||||||||||||| |
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| T |
46249291 |
agttataatatattcaacagcagaacaacatgaatcatatggtggtgaattgtggtccatgtaatatggtttacactcccccatcatatcagttataatt |
46249390 |
T |
|
| Q |
435 |
gatttacagtgtacagttcaaaacggcatcaaggaattgcatttggatatcaatacaattagaaatattgataacacagtgatcaattttgccatcttg |
533 |
Q |
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|||||||| |||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46249391 |
gatttacaatgtatagttgaaaatggcatcaaggaattgcatttggatatcaatacaattagaaatattgataacacagtgatcaattttgccatcttg |
46249489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 19 - 353
Target Start/End: Complemental strand, 46017724 - 46017386
Alignment:
| Q |
19 |
aatactaatgttggtgtgacaacaaataaaaatacaattaaaaatgttcatataagtgacgagagataaatggttggtgtctccctatacctaataaaag |
118 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46017724 |
aatattaatgttggcgtgacaacaaataaaaatacaattgaaaatgttcatataagtgacgagagataaatggttggtgtctccctatacctaataaaag |
46017625 |
T |
|
| Q |
119 |
aaaagcatagtttacgtaccg---gatggagcagtggtactaaccttattagcatcaaacaatgtaaacataattatcaatacataaaacaggaaaagat |
215 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
46017624 |
aaaagcatagtttacgtaccgagggatggagcagtggtactaaccttattagcatcaaacaatgtaaacataattatcaatacataaaacaagaaaagat |
46017525 |
T |
|
| Q |
216 |
aaaagagtta-gagttaattatttaccttgacaggggagggatactccacaaagagtaagcaagttggccgtgtttgtggcatcgaaaggtaaattgtcg |
314 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46017524 |
aaaagagttaagagttaattatttaccttgacaggagagggatactccactaagagtaagcaagttggccgtgtttgtggcatcgaaaggtaaattgtcg |
46017425 |
T |
|
| Q |
315 |
atttcttccaatttaatatcacaaatgcaaccggaagaa |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
46017424 |
atttcttccaatttaatatcacaaatgcaaccgtaagaa |
46017386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 19 - 353
Target Start/End: Complemental strand, 46197992 - 46197654
Alignment:
| Q |
19 |
aatactaatgttggtgtgacaacaaataaaaatacaattaaaaatgttcatataagtgacgagagataaatggttggtgtctccctatacctaataaaag |
118 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46197992 |
aatattaatgttggcgtgacaacaaataaaaatacaattgaaaatgttcatataagtgacgagagataaatggttggtgtctccctatacctaataaaag |
46197893 |
T |
|
| Q |
119 |
aaaagcatagtttacgtaccg---gatggagcagtggtactaaccttattagcatcaaacaatgtaaacataattatcaatacataaaacaggaaaagat |
215 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
46197892 |
aaaagcatagtttacgtaccgagggatggagcagtggtactaaccttattagcatcaaacaatgtaaacataattatcaatacataaaacaagaaaagat |
46197793 |
T |
|
| Q |
216 |
aaaagagtta-gagttaattatttaccttgacaggggagggatactccacaaagagtaagcaagttggccgtgtttgtggcatcgaaaggtaaattgtcg |
314 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46197792 |
aaaagagttaagagttaattatttaccttgacaggagagggatactccactaagagtaagcaagttggccgtgtttgtggcatcgaaaggtaaattgtcg |
46197693 |
T |
|
| Q |
315 |
atttcttccaatttaatatcacaaatgcaaccggaagaa |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
46197692 |
atttcttccaatttaatatcacaaatgcaaccgtaagaa |
46197654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 156 - 534
Target Start/End: Original strand, 46252364 - 46252760
Alignment:
| Q |
156 |
taaccttattagcatcaaacaatgtaaacataattatcaatacataaaacaggaaaagataaaagagttagagttaattatttaccttgacaggggaggg |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
46252364 |
taaccttattagcatcaaacaatgtaaacataattatcaatacataaaacaagaaaagataaaagagttagagttaattatttaccttgacaggagaggg |
46252463 |
T |
|
| Q |
256 |
atactccacaaagagtaagcaagttggccgtgtttgtggcatcgaaaggtaaattgtcgatttcttccaatttaatatcacaaatgcaaccggaagaagt |
355 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |||| || || ||||||| ||| || ||||| ||||||||||||||||||| ||||||| |
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| T |
46252464 |
atactccacaaagagtaagcaagttggctgtgtttgtgacatcaaatggcaaattgtggat---tttcaattaaatatcacaaatgcaaccgtaagaagt |
46252560 |
T |
|
| Q |
356 |
agttataatatattcaatagcagaacaacatgaatcatattgttgtgaa---------------------ttacactccccaatcatatcagttataatt |
434 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||| |
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|
| T |
46252561 |
agttataatatattcaacagcagaacaacatgaatcatatggttgtgaattgtggtccatgtaatatggtttacactcccccatcatatcagttataatt |
46252660 |
T |
|
| Q |
435 |
gatttacagtgtacagttcaaaacggcatcaaggaattgcatttggatatcaatacaattagaaatattgataacacagtgatcaattttgccatcttga |
534 |
Q |
| |
|
|||||||| |||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
46252661 |
gatttacaatgtatagttgaaaatggcatcaaggaattgcatttggatatcaatacaattagaaatattgacaacacagtgatcaattttgccatcttga |
46252760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 19 - 159
Target Start/End: Original strand, 46248923 - 46249066
Alignment:
| Q |
19 |
aatactaatgttggtgtgacaacaaataaaaatacaattaaaaatgttcatataagtgacgagagataaatggttggtgtctccctatacctaataaaag |
118 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46248923 |
aatattaatgttggcgtgacaacaaataaaaatacaattgaaaatgttcatataaatgacgagagataaatggttggtgtctccctatacctaataaaag |
46249022 |
T |
|
| Q |
119 |
aaaagcatagtttacgtacc---ggatggagcagtggtactaac |
159 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
46249023 |
aaaagcatagtttacgtaccgagggatggagcagtggtactaac |
46249066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 405 - 533
Target Start/End: Complemental strand, 46017332 - 46017204
Alignment:
| Q |
405 |
ttacactccccaatcatatcagttataattgatttacagtgtacagttcaaaacggcatcaaggaattgcatttggatatcaatacaattagaaatattg |
504 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46017332 |
ttacactcccccatcatatcagttataattgatttacaatgtatagttgaaaatggcatcaaggaattgcatttggatatcaatacaattagaaatattg |
46017233 |
T |
|
| Q |
505 |
ataacacagtgatcaattttgccatcttg |
533 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
46017232 |
ataacacagtgatcaattttgccatcttg |
46017204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 29 - 159
Target Start/End: Original strand, 46252206 - 46252339
Alignment:
| Q |
29 |
ttggtgtgacaacaaataaaaatacaattaaaaatgttcatataagtgacgagagataaatggttggtgtctccctatacctaataaaagaaaagcatag |
128 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
46252206 |
ttggcgtgacaacaaataaaaatacaattgaaaatgttcatataagtgacaagagataaatggttgatgtctccctatacctaataaaagaaaagcataa |
46252305 |
T |
|
| Q |
129 |
tttacgtacc---ggatggagcagtggtactaac |
159 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |
|
|
| T |
46252306 |
tttacgtaccgagggatggagcagtggtactaac |
46252339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 405 - 533
Target Start/End: Complemental strand, 46197600 - 46197472
Alignment:
| Q |
405 |
ttacactccccaatcatatcagttataattgatttacagtgtacagttcaaaacggcatcaaggaattgcatttggatatcaatacaattagaaatattg |
504 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |||| |||| |||| ||||||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
46197600 |
ttacactcccccatcatatcagttataattgatttacaatgtatagttgaaaatggcatcaaggaattgcatttgaatatcaatacaattaaaaatattg |
46197501 |
T |
|
| Q |
505 |
ataacacagtgatcaattttgccatcttg |
533 |
Q |
| |
|
| ||||||||||||||||||||||||||| |
|
|
| T |
46197500 |
acaacacagtgatcaattttgccatcttg |
46197472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 383 - 482
Target Start/End: Original strand, 46266731 - 46266830
Alignment:
| Q |
383 |
acatgaatcatattgttgtgaattacactccccaatcatatcagttataattgatttacagtgtacagttcaaaacggcatcaaggaattgcatttggat |
482 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||| |||| |||| |||| |||||||||||||||||||||||| |
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|
| T |
46266731 |
acatgaatcatattgttatgaattacactcccccatcatatcagttatgattgatttacaatgtatagttgaaaatggcatcaaggaattgcatttggat |
46266830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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