View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15163_high_70 (Length: 326)
Name: NF15163_high_70
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_high_70 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 37783624 - 37783320
Alignment:
| Q |
1 |
ccatgtgttgtgattaaggaatcctcaatgcctataactatatggatgatattatataccttataaattcattatgatatagtaaattataaagtttatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
37783624 |
ccatgtgttgtgattaaggaatcctcaatgcctataactatatggatgatattatataccttataaattcattatgatatggtaaattataaagtttatc |
37783525 |
T |
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| Q |
101 |
ttctgcacttgttttatataatgcattcatttataatatnnnnnnnnnnnnctgtaaaatgctttaccttatttagggagatggtatgaaataaaactgg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37783524 |
ttctgcacttgttttatataatgcattcatttataatat-----aaaaaaactgtaaaatgctttaccttatttagggagatggtatgaaataaaactgg |
37783430 |
T |
|
| Q |
201 |
aatatcatatattgtatgagttatgttcataggnnnnnnnattgagtaattcgtatatggtcacatgagtttaaacacaacacttaaacgaacatacaaa |
300 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37783429 |
aatatcatatattgtatgagttatgttcataggtttttttattgagtaattcgtatatggtcacatgagtttaaacacaacacttaaacgaacatacaaa |
37783330 |
T |
|
| Q |
301 |
aagcatattc |
310 |
Q |
| |
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|||| ||||| |
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| T |
37783329 |
aagcctattc |
37783320 |
T |
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