View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15163_high_71 (Length: 326)
Name: NF15163_high_71
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_high_71 |
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Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 320
Target Start/End: Original strand, 4302133 - 4302434
Alignment:
| Q |
19 |
aatatcccttttctcagcctgatcgttcgttattaagtttacaaagaagatgaaaaataaattagaagatgtttccaattaaaccacaggaaggataagg |
118 |
Q |
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| T |
4302133 |
aatatcccttttctcagcctgatcgttcgttattaagtttacaaagaagatgaaaaataaattagaagatgtttccaattaaaccacacgaaggataagg |
4302232 |
T |
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| Q |
119 |
ataattacttgcctgcataattctgtcaacccaggctcttttgtcattgttttcaaatcccatgaccgtagtgtgaggccgattgatatatctgtggagc |
218 |
Q |
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| T |
4302233 |
ataattacttgcctgcataattctgtcaacccaggctcttttgtcattgttttcaaatcccatgaccgtagtgtgaggccgattgatatatctgtggagc |
4302332 |
T |
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| Q |
219 |
agaaagaggtgataagcaaacatgatcagcaatccagaagggactaaaaccaaatccagattctccttatggaacttcattttcagtatcttcctgccta |
318 |
Q |
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| T |
4302333 |
agaaagaggtgataagcaaacatgatcagcaatccagaagggactaaaaccaaatccagattctccttatggaacttcattttcagtatcttcctgccta |
4302432 |
T |
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| Q |
319 |
tg |
320 |
Q |
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|| |
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| T |
4302433 |
tg |
4302434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 189 - 318
Target Start/End: Complemental strand, 55810749 - 55810620
Alignment:
| Q |
189 |
gtgtgaggccgattgatatatctgtggagcagaaagaggtgataagcaaacatgatcagcaatccagaagggactaaaaccaaatccagattctccttat |
288 |
Q |
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| T |
55810749 |
gtgtgaagtcgattgaaatatctataaagcagaaagaggtgataagcaaacatgactagcaactcacaaaggaccaaaatcaaatccagacactccttgt |
55810650 |
T |
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| Q |
289 |
ggaacttcattttcagtatcttcctgccta |
318 |
Q |
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| T |
55810649 |
ggaacttcattttcagtttcttccttccta |
55810620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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