View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15163_high_83 (Length: 301)

Name: NF15163_high_83
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15163_high_83
NF15163_high_83
[»] chr7 (1 HSPs)
chr7 (8-43)||(6726046-6726081)
[»] chr3 (1 HSPs)
chr3 (8-43)||(33143579-33143614)
[»] chr1 (4 HSPs)
chr1 (8-43)||(11439647-11439682)
chr1 (8-43)||(9312967-9313002)
chr1 (8-43)||(9557327-9557362)
chr1 (11-43)||(27102604-27102636)
[»] chr5 (1 HSPs)
chr5 (8-43)||(26405175-26405210)
[»] chr4 (1 HSPs)
chr4 (8-43)||(41117595-41117630)
[»] chr2 (2 HSPs)
chr2 (9-43)||(29139579-29139613)
chr2 (68-148)||(26742644-26742724)


Alignment Details
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 43
Target Start/End: Complemental strand, 6726081 - 6726046
Alignment:
Q  8 gagcagagatctggttgtttaataaaatttgttgtt 43  Q
    ||||||||||||||||||||||||||||||||||||    
T  6726081 gagcagagatctggttgtttaataaaatttgttgtt 6726046  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 43
Target Start/End: Complemental strand, 33143614 - 33143579
Alignment:
Q  8 gagcagagatctggttgtttaataaaatttgttgtt 43  Q
    ||||||||||||||||||||||||||||||||||||    
T  33143614 gagcagagatctggttgtttaataaaatttgttgtt 33143579  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 43
Target Start/End: Complemental strand, 11439682 - 11439647
Alignment:
Q  8 gagcagagatctggttgtttaataaaatttgttgtt 43  Q
    ||||||||||||||||||||||||||||||||||||    
T  11439682 gagcagagatctggttgtttaataaaatttgttgtt 11439647  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 43
Target Start/End: Complemental strand, 9313002 - 9312967
Alignment:
Q  8 gagcagagatctggttgtttaataaaatttgttgtt 43  Q
    |||||||||||| |||||||||||||||||||||||    
T  9313002 gagcagagatctcgttgtttaataaaatttgttgtt 9312967  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 43
Target Start/End: Original strand, 9557327 - 9557362
Alignment:
Q  8 gagcagagatctggttgtttaataaaatttgttgtt 43  Q
    |||||||||||||||||||||| |||||||||||||    
T  9557327 gagcagagatctggttgtttaacaaaatttgttgtt 9557362  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 43
Target Start/End: Original strand, 27102604 - 27102636
Alignment:
Q  11 cagagatctggttgtttaataaaatttgttgtt 43  Q
    |||||||||||||||||||||||||||| ||||    
T  27102604 cagagatctggttgtttaataaaatttgctgtt 27102636  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 43
Target Start/End: Complemental strand, 26405210 - 26405175
Alignment:
Q  8 gagcagagatctggttgtttaataaaatttgttgtt 43  Q
    ||||||| ||||||||||||||||||||||||||||    
T  26405210 gagcagaaatctggttgtttaataaaatttgttgtt 26405175  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 43
Target Start/End: Complemental strand, 41117630 - 41117595
Alignment:
Q  8 gagcagagatctggttgtttaataaaatttgttgtt 43  Q
    |||||||||||| |||||||||||||||||||||||    
T  41117630 gagcagagatctagttgtttaataaaatttgttgtt 41117595  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 29139613 - 29139579
Alignment:
Q  9 agcagagatctggttgtttaataaaatttgttgtt 43  Q
    |||||||||||||||||||||||||| ||||||||    
T  29139613 agcagagatctggttgtttaataaaaattgttgtt 29139579  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 148
Target Start/End: Original strand, 26742644 - 26742724
Alignment:
Q  68 aacacttataataacaaatcaaggaaccactgaaatctcaaacgtagcaacaattttgttctaaattcgattcaaggagca 148  Q
    ||||||||||| ||||| || ||||| |||| |||||||||  | ||||||||||||  | |||||| || ||||||||||    
T  26742644 aacacttataacaacaattcgaggaatcactcaaatctcaagtggagcaacaatttttctttaaatttgactcaaggagca 26742724  T

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