View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15163_high_90 (Length: 281)
Name: NF15163_high_90
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_high_90 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 11 - 264
Target Start/End: Original strand, 34525260 - 34525514
Alignment:
| Q |
11 |
catcatcacacaaataaaa-cataatggaaatgaaaaaaggaactagtttccaatgatgcgagagtactcactagggaaatacagacttgactttctcaa |
109 |
Q |
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| T |
34525260 |
catcatcacacaaataaaaacataatggaaatgaaaaaaggaactagtttccaatgatgcgagagtactcactagggaaatacagacttgactttctcaa |
34525359 |
T |
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| Q |
110 |
tatccagagatttctggagagaacgaggaacccctagcttgatttgcaatttcatctgttcaaaactgacaccgggaatggaacctaaaccaaattaatc |
209 |
Q |
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| T |
34525360 |
tatccagagatttctggagagaacgaggaacccctagcttgatttgcaatttcatctgttcaaaactgacaccaggaatggaacctaaaccaaattaatc |
34525459 |
T |
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| Q |
210 |
acattagaagtttagaattgaagaaacaattttgaacatcaattgtcaaaatata |
264 |
Q |
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| T |
34525460 |
acattagaagtttagaattgaagaaacaattttgaacatcaattgtcaaaatata |
34525514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 74 - 263
Target Start/End: Original strand, 34521707 - 34521896
Alignment:
| Q |
74 |
gtactcactagggaaatacagacttgactttctcaatatccagagatttctggagagaacgaggaacccctagcttgatttgcaatttcatctgttcaaa |
173 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||| ||||| |||||||||||||| |||| |
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| T |
34521707 |
gtactcactacggaaatacagacttgactttctcaatatccagagcttgttggagagaatgaggaacccctagtttgatctgcaatttcatctgaccaaa |
34521806 |
T |
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| Q |
174 |
actgacaccgggaatggaacctaaaccaaattaatcacattagaagtttagaattgaagaaacaattttgaacatcaattgtcaaaatat |
263 |
Q |
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| T |
34521807 |
actgacaccaggaatggaacctaaaccaaattcatctcattagaaatttagaattgaagatacaattttgaacaacaattgtcaaaatat |
34521896 |
T |
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