View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15163_high_92 (Length: 279)
Name: NF15163_high_92
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_high_92 |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 17 - 272
Target Start/End: Complemental strand, 29474160 - 29473905
Alignment:
| Q |
17 |
aattcatacaatttgcacatttattagcattaaggtaatctttgtgatgtcaagaattttggacactcttagtgaatttgcattaaaagggtaaaaccat |
116 |
Q |
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| T |
29474160 |
aattcatacaatttgcacatttattagcattaaggtaatctttgtgatgtcaagaatattggacactcttagtgaatttgcattaaaagggtaaaaccat |
29474061 |
T |
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| Q |
117 |
tgcatcaagaatattagcatatacattacacatatgggtttcataacatggacaccaagccatacatggcaaccaacaatgacaacagatacaactgcgt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29474060 |
tgcatcaagaatattagcatatacattacacatatgggtttcataacatggacaccaagccatacatggcaaccaacaatgacaacagatacaactgcgt |
29473961 |
T |
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| Q |
217 |
cgagttattggttgaactggagattcttcttttgtgcactatggattttcatctca |
272 |
Q |
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| T |
29473960 |
cgagttattggttgaactggagattcttcttttgtgcactatggattttcatctca |
29473905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 199 - 268
Target Start/End: Complemental strand, 29467175 - 29467106
Alignment:
| Q |
199 |
caacagatacaactgcgtcgagttattggttgaactggagattcttcttttgtgcactatggattttcat |
268 |
Q |
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|||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
29467175 |
caacagatacaactgcattaagttattggttgaattggagattcttcttttgtgcactatggattttcat |
29467106 |
T |
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