View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15163_high_97 (Length: 267)
Name: NF15163_high_97
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_high_97 |
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Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 12 - 248
Target Start/End: Original strand, 3318786 - 3319023
Alignment:
| Q |
12 |
ttatactagaaattaggttaaagcattaggaagatgccaatttattgaaagggtggagaggtggttacaaaaagtcagagatttagcggtacaaaattgc |
111 |
Q |
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| T |
3318786 |
ttatactagaaattaggttaaagcattaggaagatgccaatttattgaaagggtggagaggtggttacaaaaagtcagagatttagcggtacaaaattgc |
3318885 |
T |
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| Q |
112 |
atgtgaaaaatccaccc-nnnnnnntattgcatgtgaaaatcatagcggtgtgagctaaaaatggagaaaaggaaaagtaaatggtaaagagaatttgga |
210 |
Q |
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| T |
3318886 |
atgtgaaaaatccacccaaaaaaaatattgcatgtgaaaatcatagcggtgtgagctaaaaatggagaaaaggaaaagtaaatggtaaagtgaatttgga |
3318985 |
T |
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| Q |
211 |
atgatgctagaaatataataatactttgaagtaatgct |
248 |
Q |
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| T |
3318986 |
atgatgctagaaatataagaatactttgaagtaatgct |
3319023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 137 - 222
Target Start/End: Original strand, 3311256 - 3311340
Alignment:
| Q |
137 |
attgcatgtgaaaatcatagcggtgtgagctaaaaatggagaaaaggaaaagtaaatggtaaagagaatttggaatgatgctagaa |
222 |
Q |
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| T |
3311256 |
attgcatgtgaaaatcatagcggtgtgagctaaaaatggag-aaaggaaaatcaaatggtaaagagaatttggaatgatgctagaa |
3311340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 3311041 - 3311116
Alignment:
| Q |
21 |
aaattaggttaaag-cattaggaagatgccaatttattgaaagggtggagaggtggttacaaaaagtcagagatttag |
97 |
Q |
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| T |
3311041 |
aaattaggttaaaggcattaggaagatgccaattgga--aaagggtggagaggtggttacaaaaagttagagatttag |
3311116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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