View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15163_high_99 (Length: 267)
Name: NF15163_high_99
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_high_99 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 19 - 256
Target Start/End: Complemental strand, 36926261 - 36926024
Alignment:
| Q |
19 |
ccttccaccaaaattgaagttccgagtctttcttgatcgagtcctcatccttgtagtaaatggagcagtagtctttaacccatgtcttgatggcaaacca |
118 |
Q |
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| T |
36926261 |
ccttccaccaagattgaagttccgagtctttcttgattgagtcctcatccttgtagtaaatggagcagtagtctttaacccatgtcttgatggcaaacca |
36926162 |
T |
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| Q |
119 |
aatctccagtccatcaactgcataagggtaatcctcgattaataatcgaagaccgtatggcgaagttgagtccttaacagccattcctctgaaatttgaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36926161 |
aatctccagtccatcaactgcataagggtaatcctcgattaataatcgaagaccgtatggcgaagttgagtccttaacagccattcctctgaaatttgaa |
36926062 |
T |
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| Q |
219 |
gaggtgaagcaattgatcaacaccaatattcatctcac |
256 |
Q |
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| T |
36926061 |
gaggtgaagcaattgatcaacaccaatattcatttcac |
36926024 |
T |
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Back To:
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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 46709330 - 46709523
Alignment:
| Q |
19 |
ccttccaccaaaattgaagttccgagtctttcttgatcgagtcctcatccttgtagtaaatggagcagtagtctttaacccatgtcttgatggcaaacca |
118 |
Q |
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| T |
46709330 |
ccttccaccaagattgtagttctgcatctttctttaccgtgtcatcattcttgtagtaaaaggaacagtagtcctgaacccatgtgttgattgcaaacca |
46709429 |
T |
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| Q |
119 |
aatctccagtccatcaactgcataagggtaatcctcgattaataatcgaagaccgtatggcgaagttgagtccttaacagccattcctctgaaa |
212 |
Q |
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| T |
46709430 |
aatctctagcccgtccaccgcgtaagggtaatcgttgactattagtcgaaggccatgcggagaagctgaatctttaattgccattcctctgaaa |
46709523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 154
Target Start/End: Original strand, 6262441 - 6262522
Alignment:
| Q |
73 |
agtaaatggagcagtagtctttaacccatgtcttgatggcaaaccaaatctccagtccatcaactgcataagggtaatcctc |
154 |
Q |
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| T |
6262441 |
agtatatggagacgtagtcttgtacccatgtcttaatagcatcccaaatgtcaagtccatcaacagcataagggtaatcctc |
6262522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 157
Target Start/End: Complemental strand, 9606114 - 9606044
Alignment:
| Q |
87 |
tagtctttaacccatgtcttgatggcaaaccaaatctccagtccatcaactgcataagggtaatcctcgat |
157 |
Q |
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| T |
9606114 |
tagtcttggacccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgat |
9606044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 121
Target Start/End: Original strand, 49608531 - 49608567
Alignment:
| Q |
85 |
agtagtctttaacccatgtcttgatggcaaaccaaat |
121 |
Q |
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| T |
49608531 |
agtagtcctcaacccatgtcttgatggcaaaccaaat |
49608567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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