View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15163_low_1 (Length: 967)
Name: NF15163_low_1
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 25 - 424
Target Start/End: Complemental strand, 2761689 - 2761293
Alignment:
| Q |
25 |
ccaaattcaacacgttcacttatcattcaaggaaatcacaagttctataaattggaatgatttgtagccaatttattccatgcaaatactcttacttaca |
124 |
Q |
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| T |
2761689 |
ccaaattcaatacgttcacttatcattcaaggaaatcacaagttctataaattggaattatttgtagccaatttattccatgcaaatactcttacttaca |
2761590 |
T |
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| Q |
125 |
caatggccaaaaccatcactgcttcactaattttgattctccttattgttgcaactctgaatgattatagtgttgagggtgcaggaaaagagaaagatgg |
224 |
Q |
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| T |
2761589 |
caatggccaaaaccatcactgcttcactaattttgattctccttattgttgcaactctgaatgattatagtgttgaaggtgcaggaaaagagaaagatgt |
2761490 |
T |
|
| Q |
225 |
tggtgttgacgtaatatctaaaaaggttggggaagaaacagattgtttcattttgtatttgaaatgtgtggtatttcgtatccttatcttttgtcctgcg |
324 |
Q |
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| T |
2761489 |
tggtgttgacgacatatctaaaaagtttgggcaagaaacagattgttacattttgtatttgaaatgtgtggtatttcgtatccttatcttttgtcctgcg |
2761390 |
T |
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| Q |
325 |
tactctacgttttgtcttcatcatgaaactaccgcagnnnnnnnnnnnnnnnnncctcctaaagctgaaaaccttccatgatggaccaatggtttgtgtg |
424 |
Q |
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| T |
2761389 |
tactctacgttttgtcttcatcatgaaactaccgcagctactactactacta---ctcctaaagctgaaaaccttccatgatggaccaatggtttgtgtg |
2761293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 493 - 949
Target Start/End: Complemental strand, 2761183 - 2760761
Alignment:
| Q |
493 |
ttaaataacctttatgggccagtcctcttaattatattgtgctatgatatcatgcatggttgtacttatatatatatccagaatttaaataaaatttcta |
592 |
Q |
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| T |
2761183 |
ttaaataacctttatgggccagtcctcttaattatattgtgctatgatatcatg----gttgtacttatatatat--ccagaatttaaataaaatttcta |
2761090 |
T |
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| Q |
593 |
gtgtttttcttgtcaaatcgatggaaatatggttttggctagtattacaatattatatatcatgtttannnnnnnnnnnnnngttatagttaaagcaaat |
692 |
Q |
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| T |
2761089 |
gtgtttttcttgtcaaatcgatggaaatatggttttggctagcattacaatgttatatatcatgttta-----tttttttttgttatagttaaagcaaat |
2760995 |
T |
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| Q |
693 |
tcttttcaccaataagtgaaagaaagacgagatagttataatactatat----atgttaatttgagtttttgtaaatgtgttggagtttttgtaatttga |
788 |
Q |
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| T |
2760994 |
tcttttcaccaataagtgaaaga------agatagttataatactatatatgcatgttaatttgagtttttgtaaatgggttggagtttttgtaatttga |
2760901 |
T |
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| Q |
789 |
gtttatagacaaaaactgaactcatttagacgaaaattgtttttagttttagtataaacgtgtttagtttttcaatgtaaaattatagacgaaaactaaa |
888 |
Q |
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| T |
2760900 |
gtttatagacaaaaactgaactcatttagacgaaaattgtttttagt---------------------ttttcaatgtaaaattatagacgaaaactaaa |
2760822 |
T |
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| Q |
889 |
ccattttagacctgaaattggaagagaattaagaaaagagatgtatttggagagaacatga |
949 |
Q |
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| T |
2760821 |
ccattttagacctgaaattggaagagaattaagaaaagagatgtatttggagagaacatga |
2760761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 110
Target Start/End: Complemental strand, 11952641 - 11952570
Alignment:
| Q |
39 |
ttcacttatcattcaaggaaatcacaagttctataaattggaatgatttgtagccaatttattccatgcaaa |
110 |
Q |
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| T |
11952641 |
ttcacttctcatttaaggaaatcactagttctataaattagactaatttagagcccttttattccatgcaaa |
11952570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 208
Target Start/End: Complemental strand, 41814495 - 41814414
Alignment:
| Q |
127 |
atggccaaaaccatcactgcttcactaattttgattctccttattgttgcaactctgaatgattatagtgttgagggtgcag |
208 |
Q |
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| T |
41814495 |
atggcaaaaatcatcactacttcattgattttagttctccttgttgtggcaattatcaatgattgtagtgttgagggtgcag |
41814414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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