View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15163_low_10 (Length: 579)
Name: NF15163_low_10
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 505; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 18 - 575
Target Start/End: Original strand, 36035978 - 36036535
Alignment:
| Q |
18 |
attcacataataaatttgccnnnnnnnttagttagttgaaaaaatgaaatgactcacatgagaacctcccatagcaggaacaatgacaagtggaataaga |
117 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36035978 |
attcacataataaatttgccaaaaaaattagttagttgaaaaaatgaaatgactcacatgagaacctcccatagcaggaacaatgacaagtggaataaga |
36036077 |
T |
|
| Q |
118 |
atcaatgaacctaatatagaaacataatgctgaataccatacacaccaatgggaactgaaacaaccatgaagaagaaaaattcatcagcattaatcaaaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36036078 |
atcaatgaacctaatatagaaacataatgctgaataccatacacgccaatgggaactgaaacaaccatgaagaagaaaaattcatcagcattaatcaaaa |
36036177 |
T |
|
| Q |
218 |
ttttcaacctaagtaaaattataagcaatgcattatacaattatcatctaggaagcactgccacaaggacaagacactgactcgtcgactaacactccaa |
317 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
36036178 |
ttttcaacctaagtaaaatcataagcaatgcattatacaattatcatctaggaagcaatgccacaaggacaagacactgactcgtcgactaacactccaa |
36036277 |
T |
|
| Q |
318 |
gtaatttaaaaaattgaatgtaatcacatgtgtcaagtgtcagacacgccttcgatcagaagtgtcagtgctacaaagattcttatgctattattgtctt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
36036278 |
gtaatttaaaaaattgaatgtaatcacatgtgtcaagtgtcagacacgccttcggtcagaagtgtcagtgctataaagattcttatgctattattgtctt |
36036377 |
T |
|
| Q |
418 |
tacctaaaccaggtgaatctcttaattcatacttcatatgcgaatgccttaaagcaaaaccatcctcatccacagtctccggcaacgaaccagcaacttc |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
36036378 |
tacctaaaccaggtgaatctcttaattcatacttcatatgcgaatgccttaaagcaaaaccatcctcatccacagtctgcggcaacgaaccagcaacttc |
36036477 |
T |
|
| Q |
518 |
ttcattcctcgccgttctcctcaccggctgctcaaccttcacctggcctttgctactc |
575 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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|
| T |
36036478 |
ttcattcctcgccgttctcctcaccggctgctcaaccttcacctggccattggtactc |
36036535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 53 - 180
Target Start/End: Complemental strand, 44565063 - 44564933
Alignment:
| Q |
53 |
ttgaaaaaatgaaatgact---cacatgagaacctcccatagcaggaacaatgacaagtggaataagaatcaatgaacctaatatagaaacataatgctg |
149 |
Q |
| |
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|||||||| |||||||||| |||||||||| |||||||||||||| | |||||||||||| | ||||||| |||||||| ||| || | |||||||| |
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|
| T |
44565063 |
ttgaaaaactgaaatgactactcacatgagaagctcccatagcaggagctatgacaagtggagtgagaatcagtgaacctattatcgagaggtaatgctg |
44564964 |
T |
|
| Q |
150 |
aataccatacacaccaatgggaactgaaaca |
180 |
Q |
| |
|
||| ||||| ||| ||| | |||||||||| |
|
|
| T |
44564963 |
aatcccatatacagcaaggaaaactgaaaca |
44564933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 2e-29; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 64 - 174
Target Start/End: Complemental strand, 20120282 - 20120172
Alignment:
| Q |
64 |
aaatgactcacatgagaacctcccatagcaggaacaatgacaagtggaataagaatcaatgaacctaatatagaaacataatgctgaataccatacacac |
163 |
Q |
| |
|
|||| |||||| |||||||||||||| ||||||||||| |||||||||||||||||||| |||||||| || ||||| |||||||||||||||||||| |
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|
| T |
20120282 |
aaatcactcacgtgagaacctcccatggcaggaacaataacaagtggaataagaatcaacgaacctaacattgaaacgtaatgctgaataccatacaccg |
20120183 |
T |
|
| Q |
164 |
caatgggaact |
174 |
Q |
| |
|
|||| |||||| |
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|
| T |
20120182 |
caatcggaact |
20120172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 328 - 365
Target Start/End: Complemental strand, 19297496 - 19297458
Alignment:
| Q |
328 |
aaattgaatgtaatcacatgtgtca-agtgtcagacacg |
365 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
19297496 |
aaattgaatgtaatcacatgtgtcagagtgtcagacacg |
19297458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 329 - 397
Target Start/End: Original strand, 19191357 - 19191424
Alignment:
| Q |
329 |
aattgaatgtaatcacatgtgtcaagtgtcagacacgccttcgatcagaagtgtcagtgctacaaagat |
397 |
Q |
| |
|
|||||||||||||| |||||||| |||||| ||| ||||| ||||||| ||||||| |||||||||| |
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|
| T |
19191357 |
aattgaatgtaatcgcatgtgtc-agtgtcgcacatgcctttgatcagaggtgtcaggactacaaagat |
19191424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 160
Target Start/End: Original strand, 18471665 - 18471781
Alignment:
| Q |
47 |
agttagttgaaaaaatgaaatgact---cacatgagaacctcccatagcaggaacaatgacaagtggaataagaatcaatgaacctaatatagaaacata |
143 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||||||||||||| || | ||| || |||| || ||| |||| ||| || |||||| | || |
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|
| T |
18471665 |
agttagttgaaaaaatgaaatcacttatcacatgagaacctcccatagcaagatctatgccatgtggcatgagactcaaccaacttattatagataggta |
18471764 |
T |
|
| Q |
144 |
atgctgaataccataca |
160 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
18471765 |
atgttgaataccataca |
18471781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 397
Target Start/End: Original strand, 4785049 - 4785088
Alignment:
| Q |
358 |
cagacacgccttcgatcagaagtgtcagtgctacaaagat |
397 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||| |
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|
| T |
4785049 |
cagacacgtcttcgatcagaagtgtcggtgctacaaagat |
4785088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 391
Target Start/End: Original strand, 13635644 - 13635677
Alignment:
| Q |
358 |
cagacacgccttcgatcagaagtgtcagtgctac |
391 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |
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|
| T |
13635644 |
cagacacgccttctatcagaagtgtcagtgctac |
13635677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 355 - 391
Target Start/End: Complemental strand, 40064953 - 40064917
Alignment:
| Q |
355 |
tgtcagacacgccttcgatcagaagtgtcagtgctac |
391 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
40064953 |
tgtcagacacgtctttgatcagaagtgtcagtgctac |
40064917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 390
Target Start/End: Original strand, 28136285 - 28136317
Alignment:
| Q |
358 |
cagacacgccttcgatcagaagtgtcagtgcta |
390 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
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|
| T |
28136285 |
cagacacgtcttcgatcagaagtgtcagtgcta |
28136317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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