View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15163_low_102 (Length: 265)
Name: NF15163_low_102
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_low_102 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 43161379 - 43161643
Alignment:
| Q |
1 |
ttaattgatctaagccgtctatttagagattaatttgctcacattacaattcagatgattatcgctaaatattatcatcgttgatttgttgggacaaaaa |
100 |
Q |
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| T |
43161379 |
ttaattgatctaagccgtctatttagagattaatttgctcacattacaattgagatgattatcgctaaatattatcatcgttgatttgttgggacgaaaa |
43161478 |
T |
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| Q |
101 |
agatgaataaatatacaccgcaaaatccaaatccatacttttggacctaaaagatatccaaaatggggttcaaaccctcgcggtcgcttaagttcataaa |
200 |
Q |
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|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
43161479 |
agatgaataaatatacgccgcaaaatccaaatccctacttttggacctaaaagatatccaaaatggggttcaaaccctcgcagtcgcttaagttcataaa |
43161578 |
T |
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| Q |
201 |
tatgttggactgtctcatttatcattgacgatccaactcctttatatttaagcgaattattttaa |
265 |
Q |
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| T |
43161579 |
tgtgttggactgtctcatttatcattgacggtccaactcctttatatataaacgaattattttaa |
43161643 |
T |
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