View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15163_low_104 (Length: 262)
Name: NF15163_low_104
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_low_104 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 28786412 - 28786668
Alignment:
| Q |
1 |
aaaagttgttttctttcatttcttgaggctttgtattctgttgtttgagaaaacaacatggcagaagaaggtttttatccccaagattatcttactctgc |
100 |
Q |
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| T |
28786412 |
aaaagttgttttctttcatttcttgaggctttgtattctct-gtttgagaaaacaacatggcagaagaaggttttaatccccacgattatcttactctgc |
28786510 |
T |
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| Q |
101 |
cgccaaactggaaggacgatcccgaaaccaaagtaatatttttcattacttaatttcttcaaatcagttgaagtcctactttcattttacctatcttgga |
200 |
Q |
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| T |
28786511 |
caccaaattggagggatgatcctgaaaccaaagtaatatttttcatcacttaatttcttcaaatcagttgaagtcctactttcattttacctatcttgga |
28786610 |
T |
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| Q |
201 |
attaagttgtagtttgtaattttcttattttctttaattcctttttctgatgttcctt |
258 |
Q |
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|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
28786611 |
attaagttgtagtttgtaattttcattttttctttaattcctttttctgatgttcctt |
28786668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 28772471 - 28772662
Alignment:
| Q |
1 |
aaaagttgttttctttcatttcttgaggctttgtattctgttgtttgagaaaacaacatggcagaagaaggtttttatccccaagattatcttactctgc |
100 |
Q |
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| T |
28772471 |
aaaagttgttttctttcatttcttgaggctttgtattctgctgtttgagaaaacaacatggcagaagaaggttttaatccccaagattatcttactctgc |
28772570 |
T |
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| Q |
101 |
cgccaaactggaaggacgatcccgaaaccaaagtaatatttttcattacttaatttcttcaaatcagttgaagtcctactttcattttacct |
192 |
Q |
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| T |
28772571 |
cgccaaactggaaggacgatcccgaaaccaaagtaatatttttcatcatttaatttcttcaaatcagttgaagtcctactttcattttacct |
28772662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 192 - 260
Target Start/End: Original strand, 28772686 - 28772754
Alignment:
| Q |
192 |
tatcttggaattaagttgtagtttgtaattttcttattttctttaattcctttttctgatgttcctttg |
260 |
Q |
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| T |
28772686 |
tatcttggaattaagttgtagtttgtaattttcttattttctttaattcctttttctgatgttcctttg |
28772754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 28772424 - 28772468
Alignment:
| Q |
1 |
aaaagttgttttctttcatttcttgaggctttgtattctgttgtt |
45 |
Q |
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| T |
28772424 |
aaaagttgttttctttcatttcttgatgcattgtattctgctgtt |
28772468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 28786364 - 28786410
Alignment:
| Q |
1 |
aaaagttgttttctttcatttcttgaggctttgtattctgttgtttg |
47 |
Q |
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|||| ||||||||||||||||||||| || |||||||||| |||||| |
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| T |
28786364 |
aaaatttgttttctttcatttcttgatgcattgtattctgctgtttg |
28786410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 28772377 - 28772421
Alignment:
| Q |
1 |
aaaagttgttttctttcatttcttgaggctttgtattctgttgtt |
45 |
Q |
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|||| ||||||||||||||||||||| || |||||||||| |||| |
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| T |
28772377 |
aaaatttgttttctttcatttcttgatgcattgtattctgctgtt |
28772421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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