View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15163_low_107 (Length: 259)

Name: NF15163_low_107
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15163_low_107
NF15163_low_107
[»] chr6 (4 HSPs)
chr6 (19-250)||(34881682-34881913)
chr6 (54-112)||(26373087-26373145)
chr6 (78-110)||(5565469-5565501)
chr6 (71-111)||(5730193-5730233)
[»] chr7 (3 HSPs)
chr7 (76-154)||(32888962-32889040)
chr7 (32-110)||(24942477-24942555)
chr7 (126-154)||(8558818-8558846)
[»] chr5 (1 HSPs)
chr5 (42-112)||(42217639-42217709)
[»] chr4 (2 HSPs)
chr4 (34-108)||(13458792-13458866)
chr4 (48-112)||(13298527-13298591)
[»] chr3 (1 HSPs)
chr3 (42-91)||(21866574-21866623)


Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 250
Target Start/End: Original strand, 34881682 - 34881913
Alignment:
Q  19 actaccacacaacagcactataacatagtggaatatgaacaaatcactatcattccatgatacgctatttagtacgaagtcttgtcaaatagtgtctact 118  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  34881682 actaccacacaacagcactataacatagcggaatatgaacaaatcactatcgttccacgatacgctatttagtacaaagtcttgtcaaatagtgtctact 34881781  T
Q  119 gcagctttataacattgtagcatagcggaatttgaataaatatatatttcgcactttctgcgattgacaacattgccacatagcacagaaagagggttgt 218  Q
    || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34881782 gcggctttataacattgtagcatagtggaatttgaataaatatatatttcgcactttctgcgattgacaacattgccacatagcacagaaagagggttgt 34881881  T
Q  219 cttaccgggtttctcttcaattcttcttcatt 250  Q
    || |||||||||||||||||||||||||||||    
T  34881882 ctaaccgggtttctcttcaattcttcttcatt 34881913  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 112
Target Start/End: Original strand, 26373087 - 26373145
Alignment:
Q  54 tgaacaaatcactatcattccatgatacgctatttagtacgaagtcttgtcaaatagtg 112  Q
    ||||||| |||||||  |||  |||||||||||||||||| |||| |||||||||||||    
T  26373087 tgaacaactcactattgttctgtgatacgctatttagtacaaagtgttgtcaaatagtg 26373145  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 110
Target Start/End: Complemental strand, 5565501 - 5565469
Alignment:
Q  78 atacgctatttagtacgaagtcttgtcaaatag 110  Q
    ||||||||||||||||||||| |||||||||||    
T  5565501 atacgctatttagtacgaagtgttgtcaaatag 5565469  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 5730233 - 5730193
Alignment:
Q  71 ttccatgatacgctatttagtacgaagtcttgtcaaatagt 111  Q
    |||||||||| |||||||||||| || ||||||||||||||    
T  5730233 ttccatgatatgctatttagtacaaaatcttgtcaaatagt 5730193  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 76 - 154
Target Start/End: Original strand, 32888962 - 32889040
Alignment:
Q  76 tgatacgctatttagtacgaagtcttgtcaaatagtgtctactgcagctttataacattgtagcatagcggaatttgaa 154  Q
    ||||| |||||||||||| |||| ||||||||||||| ||| ||| ||  ||||||  |||||||||| ||||||||||    
T  32888962 tgatatgctatttagtacaaagtattgtcaaatagtggctattgcggcgctataactctgtagcatagtggaatttgaa 32889040  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 110
Target Start/End: Original strand, 24942477 - 24942555
Alignment:
Q  32 agcactataacatagtggaatatgaacaaatcactatcattccatgatacgctatttagtacgaagtcttgtcaaatag 110  Q
    ||||||||| ||||   ||||||||||| ||| ||||  ||||||||||||||| ||||||| || | |||||||||||    
T  24942477 agcactatagcataacagaatatgaacagatcgctattgttccatgatacgctaattagtacaaaatgttgtcaaatag 24942555  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 154
Target Start/End: Complemental strand, 8558846 - 8558818
Alignment:
Q  126 tataacattgtagcatagcggaatttgaa 154  Q
    |||||||||||||||||||||||||||||    
T  8558846 tataacattgtagcatagcggaatttgaa 8558818  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 112
Target Start/End: Complemental strand, 42217709 - 42217639
Alignment:
Q  42 catagtggaatatgaacaaatcactatcattccatgatacgctatttagtacgaagtcttgtcaaatagtg 112  Q
    ||||||||||| ||||||||||||| || | | ||||||||||| ||||||| || | |||| ||||||||    
T  42217709 catagtggaatttgaacaaatcactgtcgtccaatgatacgctacttagtacaaaatattgtgaaatagtg 42217639  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 108
Target Start/End: Complemental strand, 13458866 - 13458792
Alignment:
Q  34 cactataacatagtggaatatgaacaaatcactatcattccatgatacgctatttagtacgaagtcttgtcaaat 108  Q
    ||||||| ||||||| ||| |||||||||||| ||  |||| | |||||||||||||||  |||| |||||||||    
T  13458866 cactatatcatagtgaaatttgaacaaatcaccattgttccgtaatacgctatttagtataaagtgttgtcaaat 13458792  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 112
Target Start/End: Original strand, 13298527 - 13298591
Alignment:
Q  48 ggaatatgaacaaatcactatcattccatgatacgctatttagtacgaagtcttgtcaaatagtg 112  Q
    ||||| |||||||||||||||  |||  ||||| |||||||||||| ||||  ||||||||||||    
T  13298527 ggaatttgaacaaatcactattgttctgtgatatgctatttagtacaaagtgctgtcaaatagtg 13298591  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 21866574 - 21866623
Alignment:
Q  42 catagtggaatatgaacaaatcactatcattccatgatacgctatttagt 91  Q
    ||||| ||||||| ||||||||||||| ||||| |||||| |||||||||    
T  21866574 cataggggaatattaacaaatcactattattccgtgatacactatttagt 21866623  T

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