View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15163_low_108 (Length: 258)
Name: NF15163_low_108
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_low_108 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 15 - 247
Target Start/End: Complemental strand, 36993014 - 36992782
Alignment:
| Q |
15 |
acaaagagtttgaatcccatttcaatggttagaaattcagatttaagaggatatgcacttaatgacaataacaaagatgggtttatatggatattttgtt |
114 |
Q |
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| T |
36993014 |
acaaagagtttgaatcccatttcaatggttagaaattcagatttaagaggatatgcacttaatgacaataacaaagatgagtttatatggatattttgtt |
36992915 |
T |
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| Q |
115 |
agttgaatttgtagcttttcaaaattgtgattgaatatttaatctgatatttccatgttacattataatatgcacatactgacagcaacaaagatggaat |
214 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36992914 |
agttgaatttgtaggttttcaaaattgtgattgaatatttaatctgatatttccatgttacattataatatgcacatactgacagcaacaaagatggaat |
36992815 |
T |
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| Q |
215 |
ttgtttccgttcatatggcttgttatttatttt |
247 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
36992814 |
ttgtttccgttcatatggcttgttatttatttt |
36992782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 15 - 247
Target Start/End: Complemental strand, 37018454 - 37018222
Alignment:
| Q |
15 |
acaaagagtttgaatcccatttcaatggttagaaattcagatttaagaggatatgcacttaatgacaataacaaagatgggtttatatggatattttgtt |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
37018454 |
acaaagagtttgaatcccatttcaatggttagaaattcagatttaagaggatatgcacttaatgacaataacaaagatgagtttatatggatattttgtt |
37018355 |
T |
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| Q |
115 |
agttgaatttgtagcttttcaaaattgtgattgaatatttaatctgatatttccatgttacattataatatgcacatactgacagcaacaaagatggaat |
214 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37018354 |
agttgaatttgtaggttttcaaaattgtgattgaatatttaatctgatatttccatgttacattataatatgcacatactgacagcaacaaagatggaat |
37018255 |
T |
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| Q |
215 |
ttgtttccgttcatatggcttgttatttatttt |
247 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
37018254 |
ttgtttccgttcatatggcttgttatttatttt |
37018222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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