View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15163_low_112 (Length: 250)
Name: NF15163_low_112
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_low_112 |
 | |
|
| [»] chr7 (7 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 19 - 250
Target Start/End: Complemental strand, 5289204 - 5288973
Alignment:
| Q |
19 |
tgcacatcccggtggacctgctattctagatcaagtagagcaaaagttagccttaaagcctgaaaagatgaatgcaactagagaagtgctcagtgaatat |
118 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5289204 |
tgcacatcccggtggacctgcaattctagatcaagtggagcaaaagttagccttaaagcctgaaaagatgaatgcaactagagaagtgctcagtgaatat |
5289105 |
T |
|
| Q |
119 |
ggaaatatgtcaagtgcatgtgttttgtttatcttagatgaaatgagaaagaaatcaactatagacggattgaagacaactggagaaggacttgaatggg |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5289104 |
ggaaatatgtcaagtgcatgtgttttgtttatcttagatgaaatgagaaagaaatcaaccatagacggattgaagacaactggagaaggacttgaatggg |
5289005 |
T |
|
| Q |
219 |
gtgtattatttggttttggaccaggacttacc |
250 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |
|
|
| T |
5289004 |
gtgtcttatttggttttggaccaggacttacc |
5288973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 250
Target Start/End: Original strand, 5315726 - 5315957
Alignment:
| Q |
19 |
tgcacatcccggtggacctgctattctagatcaagtagagcaaaagttagccttaaagcctgaaaagatgaatgcaactagagaagtgctcagtgaatat |
118 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5315726 |
tgcacatcccggtggacctgcaattctagatcaagtggagcaaaagttagccttaaagcctgaaaagatgaatgcaactagagaagtgctcagtgaatat |
5315825 |
T |
|
| Q |
119 |
ggaaatatgtcaagtgcatgtgttttgtttatcttagatgaaatgagaaagaaatcaactatagacggattgaagacaactggagaaggacttgaatggg |
218 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5315826 |
ggaaatatgtcaagtgcgtgtgttttgtttatcttagatgaaatgagaaagaaatcaactaaagacggattgaagacaacgggagaaggacttgaatggg |
5315925 |
T |
|
| Q |
219 |
gtgtattatttggttttggaccaggacttacc |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
5315926 |
gtgtattatttggttttggaccaggacttacc |
5315957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 250
Target Start/End: Original strand, 5311012 - 5311243
Alignment:
| Q |
19 |
tgcacatcccggtggacctgctattctagatcaagtagagcaaaagttagccttaaagcctgaaaagatgaatgcaactagagaagtgctcagtgaatat |
118 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5311012 |
tgcacatcccggtggacctgcaattctagatcaagtagagcaaaagttagccttaaagcctgaaaagatgaatgcaactagagaagtgctcagtgaatat |
5311111 |
T |
|
| Q |
119 |
ggaaatatgtcaagtgcatgtgttttgtttatcttagatgaaatgagaaagaaatcaactatagacggattgaagacaactggagaaggacttgaatggg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||| |||| |
|
|
| T |
5311112 |
ggaaatatgtcaagtgcatgtgttttgtttatcttagatgaaatgagaaagaaatcaactcaaaacggattgaagacaacgggagaaggacttgagtggg |
5311211 |
T |
|
| Q |
219 |
gtgtattatttggttttggaccaggacttacc |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
5311212 |
gtgtattatttggttttggaccaggacttacc |
5311243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 250
Target Start/End: Original strand, 5284923 - 5285154
Alignment:
| Q |
19 |
tgcacatcccggtggacctgctattctagatcaagtagagcaaaagttagccttaaagcctgaaaagatgaatgcaactagagaagtgctcagtgaatat |
118 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5284923 |
tgcacatcccggtggacctgcaattctagatcaagtagagcaaaagttagccttgaagcctgaaaagatgaatgcaaccagagaagtgctcagtgaatat |
5285022 |
T |
|
| Q |
119 |
ggaaatatgtcaagtgcatgtgttttgtttatcttagatgaaatgagaaagaaatcaactatagacggattgaagacaactggagaaggacttgaatggg |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5285023 |
ggaaatatgtcaagtgcatgtgttttgtttatcttggatgaaatgagaaagaaatcaactcaaaacggattgaagacaacgggagaaggacttgaatggg |
5285122 |
T |
|
| Q |
219 |
gtgtattatttggttttggaccaggacttacc |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
5285123 |
gtgtattatttggttttggaccaggacttacc |
5285154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 5303111 - 5303341
Alignment:
| Q |
19 |
tgcacatcccggtggacctgctattctagatcaagtagagcaaaagttagccttaaagcctgaaaagatgaatgcaactagagaagtgctcagtgaatat |
118 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5303111 |
tgcacatcccggtggacctgcaattctagatcaagtagagcaaaagttatcattgaagcctgaaaagatgaatgcaactagagaagtgctcagtgaatat |
5303210 |
T |
|
| Q |
119 |
ggaaatatgtcaagtgcatgtgttttgtttatcttagatgaaatgagaaagaaatcaactatagacggattgaagacaactggagaaggacttgaatggg |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
5303211 |
ggaaatatgtcaagtgcatgtgttttgtttatcttagatgaaatgagaaagaaatcaactaaagatgggttgaagacaactggagaaggacttgaatggg |
5303310 |
T |
|
| Q |
219 |
gtgtattatttggttttggaccaggacttac |
249 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |
|
|
| T |
5303311 |
gtgtgttatttggttttggaccaggacttac |
5303341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 19 - 250
Target Start/End: Complemental strand, 46706495 - 46706264
Alignment:
| Q |
19 |
tgcacatcccggtggacctgctattctagatcaagtagagcaaaagttagccttaaagcctgaaaagatgaatgcaactagagaagtgctcagtgaatat |
118 |
Q |
| |
|
|||||| || ||||| ||||| ||| |||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||| ||||||||| |
|
|
| T |
46706495 |
tgcacaccctggtggccctgcaattttagatcaagtagagcaaaagttagccttgaagcctgaaaagatgagagccactagagaagtgcttagtgaatat |
46706396 |
T |
|
| Q |
119 |
ggaaatatgtcaagtgcatgtgttttgtttatcttagatgaaatgagaaagaaatcaactatagacggattgaagacaactggagaaggacttgaatggg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||| ||||||||||||||||||| |
|
|
| T |
46706395 |
ggaaatatgtcaagtgcatgtgttttgtttatcttagatgaaatgagaaagaaatcaactcaagatggtctgaagacaacaggagaaggacttgaatggg |
46706296 |
T |
|
| Q |
219 |
gtgtattatttggttttggaccaggacttacc |
250 |
Q |
| |
|
|||| |||||||| |||||||||||||||||| |
|
|
| T |
46706295 |
gtgtgttatttggctttggaccaggacttacc |
46706264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 104 - 170
Target Start/End: Complemental strand, 32530430 - 32530364
Alignment:
| Q |
104 |
gtgctcagtgaatatggaaatatgtcaagtgcatgtgttttgtttatcttagatgaaatgagaaaga |
170 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| |||||||||||||| || |||||||||||||||| |
|
|
| T |
32530430 |
gtgcttagtgaatatggaaatatgtcgagtgcttgtgttttgtttattttggatgaaatgagaaaga |
32530364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 159; Significance: 9e-85; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 1505592 - 1505822
Alignment:
| Q |
19 |
tgcacatcccggtggacctgctattctagatcaagtagagcaaaagttagccttaaagcctgaaaagatgaatgcaactagagaagtgctcagtgaatat |
118 |
Q |
| |
|
|||||| || ||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||| |
|
|
| T |
1505592 |
tgcacaccctggtggccctgcaattttagatcaagtagagcaaaagttagccttaaagcctgaaaagatgaaagccactagagaagtgcttagtgaatat |
1505691 |
T |
|
| Q |
119 |
ggaaatatgtcaagtgcatgtgttttgtttatcttagatgaaatgagaaagaaatcaactatagacggattgaagacaactggagaaggacttgaatggg |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||| || |||||||||| |||||||| |
|
|
| T |
1505692 |
ggaaatatgtcaagtgcatgtgttttgtttatcttagatgaaatgagaaagaaatcagctcaagatggattgaagactaccggagaaggacatgaatggg |
1505791 |
T |
|
| Q |
219 |
gtgtattatttggttttggaccaggacttac |
249 |
Q |
| |
|
|||| |||||||| |||||||| |||||||| |
|
|
| T |
1505792 |
gtgtgttatttggctttggaccgggacttac |
1505822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 19 - 250
Target Start/End: Original strand, 1492783 - 1493014
Alignment:
| Q |
19 |
tgcacatcccggtggacctgctattctagatcaagtagagcaaaagttagccttaaagcctgaaaagatgaatgcaactagagaagtgctcagtgaatat |
118 |
Q |
| |
|
|||||| || ||||||||||| ||| |||| ||||||||||||||||||||||||||||| |||||||||| || || | || ||||| ||||||||| |
|
|
| T |
1492783 |
tgcacaccctggtggacctgcaattttagaccaagtagagcaaaagttagccttaaagcccgaaaagatgagagccacacgggaggtgctaagtgaatat |
1492882 |
T |
|
| Q |
119 |
ggaaatatgtcaagtgcatgtgttttgtttatcttagatgaaatgagaaagaaatcaactatagacggattgaagacaactggagaaggacttgaatggg |
218 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| | | || ||||||||||| |||||||| | |||||||| |
|
|
| T |
1492883 |
ggaaatatgtcaagtgcatgtgtattgtttatcttggatgaaatgagaaagaaatcaactcaaaatggtttgaagacaaccggagaagggcatgaatggg |
1492982 |
T |
|
| Q |
219 |
gtgtattatttggttttggaccaggacttacc |
250 |
Q |
| |
|
|||| |||| || |||||||||||||||||| |
|
|
| T |
1492983 |
gtgtgctattcggctttggaccaggacttacc |
1493014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 23 - 250
Target Start/End: Original strand, 1482812 - 1483039
Alignment:
| Q |
23 |
catcccggtggacctgctattctagatcaagtagagcaaaagttagccttaaagcctgaaaagatgaatgcaactagagaagtgctcagtgaatatggaa |
122 |
Q |
| |
|
||||| |||||||| || ||||| |||||||| || |||||||||| |||||| |||||||||||||| || ||||||||||| || ||||||||||| | |
|
|
| T |
1482812 |
catccaggtggacccgcaattcttgatcaagttgaacaaaagttaggcttaaaacctgaaaagatgaaagccactagagaagtacttagtgaatatggta |
1482911 |
T |
|
| Q |
123 |
atatgtcaagtgcatgtgttttgtttatcttagatgaaatgagaaagaaatcaactatagacggattgaagacaactggagaaggacttgaatggggtgt |
222 |
Q |
| |
|
| ||||||||||||||||| ||||||||||||||||| ||| |||||||||| || ||| || | ||||| || |||||||| ||||| |||||||| |
|
|
| T |
1482912 |
acatgtcaagtgcatgtgtattgtttatcttagatgagatgcgaaagaaatcttctcaagaggggcttaagaccacaggagaagggcttgattggggtgt |
1483011 |
T |
|
| Q |
223 |
attatttggttttggaccaggacttacc |
250 |
Q |
| |
|
|| || || |||||||| ||||||||| |
|
|
| T |
1483012 |
gttgttcggctttggacctggacttacc |
1483039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 29 - 246
Target Start/End: Original strand, 1478624 - 1478841
Alignment:
| Q |
29 |
ggtggacctgctattctagatcaagtagagcaaaagttagccttaaagcctgaaaagatgaatgcaactagagaagtgctcagtgaatatggaaatatgt |
128 |
Q |
| |
|
|||||||| || |||||||| ||||| || ||||||||| |||||| |||||||| ||||| || ||||| ||||| || ||||||||||| || |||| |
|
|
| T |
1478624 |
ggtggacccgcaattctagaccaagttgaagaaaagttaggcttaaaacctgaaaaaatgaaggccactagggaagtacttagtgaatatggtaacatgt |
1478723 |
T |
|
| Q |
129 |
caagtgcatgtgttttgtttatcttagatgaaatgagaaagaaatcaactatagacggattgaagacaactggagaaggacttgaatggggtgtattatt |
228 |
Q |
| |
|
|||| |||||||| ||||| ||||| ||||| |||||||||||||| || ||| ||| | || || || || ||||| ||||| |||||||| || || |
|
|
| T |
1478724 |
caagcgcatgtgtattgttcatcttggatgagatgagaaagaaatcggctcaagagggacttaaaaccacaggtgaaggccttgactggggtgtgttgtt |
1478823 |
T |
|
| Q |
229 |
tggttttggaccaggact |
246 |
Q |
| |
|
||| |||||||| ||||| |
|
|
| T |
1478824 |
tggctttggacctggact |
1478841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 59 - 250
Target Start/End: Original strand, 1487325 - 1487516
Alignment:
| Q |
59 |
caaaagttagccttaaagcctgaaaagatgaatgcaactagagaagtgctcagtgaatatggaaatatgtcaagtgcatgtgttttgtttatcttagatg |
158 |
Q |
| |
|
||||||||||| || || || ||||||||||| || ||||| ||||| || ||||||||||| || ||||||||||| ||||| |||||||| || |||| |
|
|
| T |
1487325 |
caaaagttagctttgaaaccggaaaagatgaaggccactagggaagtacttagtgaatatggtaacatgtcaagtgcttgtgtattgtttatattggatg |
1487424 |
T |
|
| Q |
159 |
aaatgagaaagaaatcaactatagacggattgaagacaactggagaaggacttgaatggggtgtattatttggttttggaccaggacttacc |
250 |
Q |
| |
|
|||||||||||| |||| || ||| ||| | |||| || |||||||||||| ||||||| || || || || |||||||| ||||||||| |
|
|
| T |
1487425 |
aaatgagaaagagatcagctcaagagggacttgagaccacaggagaaggacttaaatggggagtgttgttcggctttggacctggacttacc |
1487516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 110 - 219
Target Start/End: Original strand, 1509819 - 1509928
Alignment:
| Q |
110 |
agtgaatatggaaatatgtcaagtgcatgtgttttgtttatcttagatgaaatgagaaagaaatcaactatagacggattgaagacaactggagaaggac |
209 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||| |||||||| || ||||||||||||||| || ||| ||| | ||||| | ||| ||||||| |
|
|
| T |
1509819 |
agtgaatatggtaatatgtcaagtgcatgtgtattgttcatcttagacgagatgagaaagaaatcagctcaagagggaattaagaccattggtgaaggac |
1509918 |
T |
|
| Q |
210 |
ttgaatgggg |
219 |
Q |
| |
|
|||||||||| |
|
|
| T |
1509919 |
ttgaatgggg |
1509928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 23 - 250
Target Start/End: Original strand, 1499859 - 1500086
Alignment:
| Q |
23 |
catcccggtggacctgctattctagatcaagtagagcaaaagttagccttaaagcctgaaaagatgaatgcaactagagaagtgctcagtgaatatggaa |
122 |
Q |
| |
|
||||| ||||| ||||| |||||||||||| | ||||||||||||| ||| || |||||||| ||| | ||| |||||||| ||||||||||| | |
|
|
| T |
1499859 |
catccgggtggtcctgcaattctagatcaaattgagcaaaagttaggcttgaaagctgaaaagttgagggtcgttagggaagtgcttagtgaatatggta |
1499958 |
T |
|
| Q |
123 |
atatgtcaagtgcatgtgttttgtttatcttagatgaaatgagaaagaaatcaactatagacggattgaagacaactggagaaggacttgaatggggtgt |
222 |
Q |
| |
|
||||||| ||||||| ||| ||||| ||||| |||| ||||||| |||||| ||| ||| || | ||||| || || ||||||| ||||||||||| |
|
|
| T |
1499959 |
atatgtctagtgcatctgtattgttcatcttgaatgagatgagaaggaaatcgactcaagatcgacttaagaccacaggtgaaggacaagaatggggtgt |
1500058 |
T |
|
| Q |
223 |
attatttggttttggaccaggacttacc |
250 |
Q |
| |
|
||| || | |||||||| ||||||||| |
|
|
| T |
1500059 |
attgttaagctttggacctggacttacc |
1500086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 44129189 - 44129419
Alignment:
| Q |
19 |
tgcacatcccggtggacctgctattctagatcaagtagagcaaaagttagccttaaagcctgaaaagatgaatgcaactagagaagtgctcagtgaatat |
118 |
Q |
| |
|
|||||| || ||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||| || || ||||||||||| ||||||||| |
|
|
| T |
44129189 |
tgcacaccctggtggacctgcaattctagatcaagttgagcaaaagttagccttaaaacctgaaaagatgaaagccaccagagaagtgcttagtgaatat |
44129288 |
T |
|
| Q |
119 |
ggaaatatgtcaagtgcatgtgttttgtttatcttagatgaaatgagaaagaaatcaactatagacggattgaagacaactggagaaggacttgaatggg |
218 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| || ||| ||| ||||||| || |||||||||||||| |||| |
|
|
| T |
44129289 |
ggaaatatgtcaagtgcttgtgttttgtttatcttagatgaaatgagaaagaagtcagctcaagatggactgaagaccacgggagaaggacttgagtggg |
44129388 |
T |
|
| Q |
219 |
gtgtattatttggttttggaccaggacttac |
249 |
Q |
| |
|
|||| |||||||| ||||||||||| ||||| |
|
|
| T |
44129389 |
gtgttttatttggctttggaccaggtcttac |
44129419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 19 - 250
Target Start/End: Original strand, 44133394 - 44133625
Alignment:
| Q |
19 |
tgcacatcccggtggacctgctattctagatcaagtagagcaaaagttagccttaaagcctgaaaagatgaatgcaactagagaagtgctcagtgaatat |
118 |
Q |
| |
|
|||||| || ||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||| || || ||||||||||| ||||||||| |
|
|
| T |
44133394 |
tgcacaccctggtggacctgcaattctagatcaagttgagcaaaagttagccttaaaacctgaaaagatgaaagccaccagagaagtgcttagtgaatat |
44133493 |
T |
|
| Q |
119 |
ggaaatatgtcaagtgcatgtgttttgtttatcttagatgaaatgagaaagaaatcaactatagacggattgaagacaactggagaaggacttgaatggg |
218 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| || ||| ||||||||||| || |||||||||||||||| | |
|
|
| T |
44133494 |
ggaaatatgtcaagtgcctgtgttttgtttatcttagatgaaatgagaaagaagtcagctcaagatggattgaagaccacaggagaaggacttgaatttg |
44133593 |
T |
|
| Q |
219 |
gtgtattatttggttttggaccaggacttacc |
250 |
Q |
| |
|
|||| |||||||| |||||||| || |||||| |
|
|
| T |
44133594 |
gtgttttatttggctttggaccgggtcttacc |
44133625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 19 - 250
Target Start/End: Original strand, 44141816 - 44142047
Alignment:
| Q |
19 |
tgcacatcccggtggacctgctattctagatcaagtagagcaaaagttagccttaaagcctgaaaagatgaatgcaactagagaagtgctcagtgaatat |
118 |
Q |
| |
|
|||||| || ||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||| || || ||||||||||| ||||||||| |
|
|
| T |
44141816 |
tgcacaccctggtggacctgcaattctagatcaagttgagcaaaagttagccttaaaacctgaaaagatgaaagccaccagagaagtgcttagtgaatat |
44141915 |
T |
|
| Q |
119 |
ggaaatatgtcaagtgcatgtgttttgtttatcttagatgaaatgagaaagaaatcaactatagacggattgaagacaactggagaaggacttgaatggg |
218 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| || ||| ||||||||||| || |||||||||||||| | | |
|
|
| T |
44141916 |
ggaaatatgtcaagtgcctgtgttttgtttatcttagatgaaatgagaaagaagtcagctcaagatggattgaagaccacgggagaaggacttgagtttg |
44142015 |
T |
|
| Q |
219 |
gtgtattatttggttttggaccaggacttacc |
250 |
Q |
| |
|
|||| |||||||| |||||||| || |||||| |
|
|
| T |
44142016 |
gtgttttatttggctttggaccgggtcttacc |
44142047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 29 - 250
Target Start/End: Complemental strand, 24163287 - 24163066
Alignment:
| Q |
29 |
ggtggacctgctattctagatcaagtagagcaaaagttagccttaaagcctgaaaagatgaatgcaactagagaagtgctcagtgaatatggaaatatgt |
128 |
Q |
| |
|
|||||||| || |||||||| || | ||| ||||||||||||| || ||||||||||||| ||| |||||| || |||| ||||||||||| || |||| |
|
|
| T |
24163287 |
ggtggacccgcaattctagacaaaattgaggaaaagttagccttgaaacctgaaaagatgagtgccactagaaaaatgcttagtgaatatggtaacatgt |
24163188 |
T |
|
| Q |
129 |
caagtgcatgtgttttgtttatcttagatgaaatgagaaagaaatcaactatagacggattgaagacaactggagaaggacttgaatggggtgtattatt |
228 |
Q |
| |
|
||||||||||||| || || ||||||||||| |||||||| ||||| || ||| ||| | ||||| || |||||||| |||||||||||||| || || |
|
|
| T |
24163187 |
caagtgcatgtgtattattcatcttagatgagatgagaaacaaatcggctcaagatggactaaagaccacaggagaagggcttgaatggggtgtgttgtt |
24163088 |
T |
|
| Q |
229 |
tggttttggaccaggacttacc |
250 |
Q |
| |
|
| ||||| |||||||||||| |
|
|
| T |
24163087 |
aagctttgggccaggacttacc |
24163066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 171
Target Start/End: Original strand, 35251523 - 35251578
Alignment:
| Q |
116 |
tatggaaatatgtcaagtgcatgtgttttgtttatcttagatgaaatgagaaagaa |
171 |
Q |
| |
|
||||| || ||||||||||| ||||| ||||| || |||||||||||||||||||| |
|
|
| T |
35251523 |
tatgggaacatgtcaagtgcttgtgtgttgttcattttagatgaaatgagaaagaa |
35251578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University