View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15163_low_113 (Length: 249)
Name: NF15163_low_113
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_low_113 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 11 - 233
Target Start/End: Original strand, 32102866 - 32103088
Alignment:
| Q |
11 |
caaaggccaattgtgcagtcaattccgttccaaagtaattatgaaatcaaactttaagttaatgttgcaccaaccttgtcaagggtctgagtggtaagca |
110 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32102866 |
caaaggccaattgtgcagtcacttccgttccaaagtaattatgaaatcaaactttaagttaatgttgcaccaaccttgtcaagggtctgagtggtaagca |
32102965 |
T |
|
| Q |
111 |
cataaagtgggggagcaacaagtttaatttccacaggacagtcatcatttccagcagcttcagccttccgcattgcctcctgcaaaaccaaatgattgta |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
32102966 |
cataaagtgggggagcaacaagtttaatttccacagggcagtcatcatttccagcagcttcagccttctgcattgcctcctgcaaaaccaaatgattgta |
32103065 |
T |
|
| Q |
211 |
aaacatgataaaacccacgtaac |
233 |
Q |
| |
|
|||||||||||||||||| |||| |
|
|
| T |
32103066 |
aaacatgataaaacccacataac |
32103088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 83 - 233
Target Start/End: Original strand, 32108793 - 32108943
Alignment:
| Q |
83 |
accttgtcaagggtctgagtggtaagcacataaagtgggggagcaacaagtttaatttccacaggacagtcatcatttccagcagcttcagccttccgca |
182 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
32108793 |
accttgtcaagtgtctgagtggtaagcacgtaaagtgggggagcaacaagtttaattttcacagggcagtcatcatttccagtagcttcagccttccgca |
32108892 |
T |
|
| Q |
183 |
ttgcctcctgcaaaaccaaatgattgtaaaacatgataaaacccacgtaac |
233 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||| ||||||||| |||| |
|
|
| T |
32108893 |
ttgcctcctgcaaaaccaaatgattatcgaacatgacaaaacccacataac |
32108943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 75 - 207
Target Start/End: Original strand, 32117075 - 32117207
Alignment:
| Q |
75 |
ttgcaccaaccttgtcaagggtctgagtggtaagcacataaagtgggggagcaacaagtttaatttccacaggacagtcatcatttccagcagcttcagc |
174 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
32117075 |
ttgcaccaaccttgtcaagggtatgagtggtaagcacataaagcggaggagcaacaagtttaatattcacaggacagtcatcatttccagcagcttcagc |
32117174 |
T |
|
| Q |
175 |
cttccgcattgcctcctgcaaaaccaaatgatt |
207 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |
|
|
| T |
32117175 |
cttccgcattgcctcctgcaaagccaaatgatt |
32117207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University