View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15163_low_117 (Length: 248)
Name: NF15163_low_117
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_low_117 |
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Alignment Details
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 34525499 - 34525552
Alignment:
| Q |
1 |
caattgtcaaaatat--gttataaaaagagttatcaactatgaaatacaaaact |
52 |
Q |
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| T |
34525499 |
caattgtcaaaatatatgttataaaaagagttatcaactatgaaatacaaaact |
34525552 |
T |
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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 34525720 - 34525765
Alignment:
| Q |
188 |
actcacttagtgtgccacaataaatttatatatgttgaacccaaac |
233 |
Q |
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| T |
34525720 |
actcacttaatgtgccacaataaatttatatatgttgaacccaaac |
34525765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 34521882 - 34521933
Alignment:
| Q |
1 |
caattgtcaaaatatgt--tataaaaagagttatcaactatgaaatacaaaa |
50 |
Q |
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| T |
34521882 |
caattgtcaaaatatctggtttaaaaagagttatcaactatgaaatacaaaa |
34521933 |
T |
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