View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15163_low_118 (Length: 248)
Name: NF15163_low_118
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_low_118 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 10 - 233
Target Start/End: Original strand, 5251340 - 5251563
Alignment:
| Q |
10 |
agaagaaggacatgattctgagatggagaaactcactagagctcaacgaaagagaattcgtaagaagaagatgaaggaagaagcaatactacgtggaaaa |
109 |
Q |
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| T |
5251340 |
agaagaaggacatgattctgagatggagaaactcactagagctcaacgaaagagaattcgtaagaagaagatgaaggaagaagcaatactacgtggaaaa |
5251439 |
T |
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| Q |
110 |
ttgattgggccattgttgcctccgacccaagcaacccagtgtggggatgatgctcctcctccaactgttcgatcaaatgcttctcaggaaggttattcaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5251440 |
ttgattgggccattgttgcctccgacccaagcaacccagtgtggggatgatgctcctcctccaactgttcgatcaaatgcttctcaggaaggttattcaa |
5251539 |
T |
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| Q |
210 |
ttgcaaacctattgactatgtttc |
233 |
Q |
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|||||||||||||||||||||||| |
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| T |
5251540 |
ttgcaaacctattgactatgtttc |
5251563 |
T |
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