View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15163_low_121 (Length: 245)

Name: NF15163_low_121
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15163_low_121
NF15163_low_121
[»] chr2 (3 HSPs)
chr2 (55-224)||(13448384-13448553)
chr2 (55-224)||(13454855-13455024)
chr2 (55-224)||(13440221-13440390)
[»] chr5 (2 HSPs)
chr5 (61-224)||(12540706-12540869)
chr5 (64-224)||(28385355-28385515)
[»] chr7 (1 HSPs)
chr7 (55-224)||(3417516-3417685)
[»] chr4 (4 HSPs)
chr4 (55-221)||(48958168-48958337)
chr4 (55-226)||(48965348-48965519)
chr4 (55-185)||(48961353-48961486)
chr4 (55-221)||(48912331-48912500)
[»] scaffold0536 (2 HSPs)
scaffold0536 (55-221)||(6497-6666)
scaffold0536 (90-221)||(10517-10648)
[»] chr6 (2 HSPs)
chr6 (90-226)||(12590196-12590332)
chr6 (91-167)||(12483492-12483568)
[»] chr8 (1 HSPs)
chr8 (91-221)||(12641506-12641636)


Alignment Details
Target: chr2 (Bit Score: 166; Significance: 6e-89; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 55 - 224
Target Start/End: Complemental strand, 13448553 - 13448384
Alignment:
Q  55 tggttaccgaagggatttgaagagagaaatatcgggaagaagggtttgatcattaggggttgggccccacaagttaagatattgagccaccctgcagtgg 154  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  13448553 tggttaccgaagggatttgaagagagaaatatcgggaagaagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcagtgg 13448454  T
Q  155 ggggatttatgacgcattgcggggggaactcaaccgtagaggctgttagtgcgggagttccaatgataac 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13448453 ggggatttatgacgcattgcggggggaactcaaccgtagaggctgttagtgcgggagttccaatgataac 13448384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 55 - 224
Target Start/End: Complemental strand, 13455024 - 13454855
Alignment:
Q  55 tggttaccgaagggatttgaagagagaaatatcgggaagaagggtttgatcattaggggttgggccccacaagttaagatattgagccaccctgcagtgg 154  Q
    ||||| ||||||||||||||||||| ||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  13455024 tggttgccgaagggatttgaagagaaaaacatcgagaaaaagggtttgatcattaggggttgggccccacaagttaagatattgagtcaccctgcagtgg 13454925  T
Q  155 ggggatttatgacgcattgcggggggaactcaaccgtagaggctgttagtgcgggagttccaatgataac 224  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||   ||||||||||||||||||    
T  13454924 ggggatttatgacgcattgcggggggaactcaatcgtagaggctgttagcatgggagttccaatgataac 13454855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 55 - 224
Target Start/End: Complemental strand, 13440390 - 13440221
Alignment:
Q  55 tggttaccgaagggatttgaagagagaaatatcgggaagaagggtttgatcattaggggttgggccccacaagttaagatattgagccaccctgcagtgg 154  Q
    ||||| || |||||||| ||||||||||| ||  ||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  13440390 tggttgccaaagggattcgaagagagaaacattaggaggatgggtttgatcattaagggttgggccccacaagttaagatattgagccaccctgcggtgg 13440291  T
Q  155 ggggatttatgacgcattgcggggggaactcaaccgtagaggctgttagtgcgggagttccaatgataac 224  Q
    |||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||    
T  13440290 ggggatttatgacgcattgcggggggaactcaattgtagagtctgttagtgcgggagttccaatgataac 13440221  T

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Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 61 - 224
Target Start/End: Complemental strand, 12540869 - 12540706
Alignment:
Q  61 ccgaagggatttgaagagagaaatatcgggaagaagggtttgatcattaggggttgggccccacaagttaagatattgagccaccctgcagtggggggat 160  Q
    |||||||||||||| |||||||| || || || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  12540869 ccgaagggatttgaggagagaaacattggaaaaaagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcggtggggggat 12540770  T
Q  161 ttatgacgcattgcggggggaactcaaccgtagaggctgttagtgcgggagttccaatgataac 224  Q
    ||||||| ||||| ||||| |||||||  |||||||||||| ||||||||||||||||||||||    
T  12540769 ttatgacacattgtgggggaaactcaattgtagaggctgttggtgcgggagttccaatgataac 12540706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 64 - 224
Target Start/End: Complemental strand, 28385515 - 28385355
Alignment:
Q  64 aagggatttgaagagagaaatatcgggaagaagggtttgatcattaggggttgggccccacaagttaagatattgagccaccctgcagtggggggattta 163  Q
    ||||||||||| |||||||| || || ||||||||||| || || |||||||||||||||||||||  |||||||||| ||||||| ||||||||||||     
T  28385515 aagggatttgaggagagaaacattggaaagaagggtttcataatcaggggttgggccccacaagttctgatattgagcaaccctgcggtggggggatttc 28385416  T
Q  164 tgacgcattgcggggggaactcaaccgtagaggctgttagtgcgggagttccaatgataac 224  Q
    |||| |||||||| ||||||||||  |||||||||||| | ||||||||||||||||||||    
T  28385415 tgacacattgcggagggaactcaattgtagaggctgttggcgcgggagttccaatgataac 28385355  T

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Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 55 - 224
Target Start/End: Original strand, 3417516 - 3417685
Alignment:
Q  55 tggttaccgaagggatttgaagagagaaatatcgggaagaagggtttgatcattaggggttgggccccacaagttaagatattgagccaccctgcagtgg 154  Q
    ||||| |||||||||||||| |||||||| || || ||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||| || |    
T  3417516 tggttgccgaagggatttgaggagagaaacattggaaagaagggtttgatcgttaggggttgggccccacaggttcagatattgagccaccctgcggtag 3417615  T
Q  155 ggggatttatgacgcattgcggggggaactcaaccgtagaggctgttagtgcgggagttccaatgataac 224  Q
    ||||||||||||| ||||| ||||||||||||   || ||||||||| |||| |||||||||||||||||    
T  3417616 ggggatttatgacacattgtggggggaactcatttgttgaggctgttggtgcaggagttccaatgataac 3417685  T

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Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 55 - 221
Target Start/End: Complemental strand, 48958337 - 48958168
Alignment:
Q  55 tggttaccgaagggatttgaagagagaaatatcgggaagaag---ggtttgatcattaggggttgggccccacaagttaagatattgagccaccctgcag 151  Q
    ||||| ||||| ||||| ||||||||||| || || ||||||   ||||||||||||||||| |||||||||||||||  |||  ||||||||  ||| |    
T  48958337 tggttgccgaaaggattcgaagagagaaacattggaaagaagaaaggtttgatcattagggggtgggccccacaagttttgattctgagccacattgccg 48958238  T
Q  152 tggggggatttatgacgcattgcggggggaactcaaccgtagaggctgttagtgcgggagttccaatgat 221  Q
    |||| | ||||||||| ||||||||| ||||||| || || ||||||||||| ||||| |||||||||||    
T  48958237 tgggtgcatttatgacacattgcgggtggaactccactgtggaggctgttagcgcgggggttccaatgat 48958168  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 55 - 226
Target Start/End: Complemental strand, 48965519 - 48965348
Alignment:
Q  55 tggttaccgaagggatttgaagagagaaatatcgggaagaagggtttgatcattaggggttgggccccacaagttaagatattgagccaccctgcagtgg 154  Q
    |||||||| |||||||| ||||||||||| || || |||||||||||||| |||||||||||||| || || |||  |||  |||||||||| || ||||    
T  48965519 tggttaccaaagggattcgaagagagaaacattggaaagaagggtttgattattaggggttgggctccgcaggttctgattctgagccaccccgctgtgg 48965420  T
Q  155 ggggatttatgacgcattgcggggggaactcaaccgtagaggctgttagtgcgggagttccaatgataacat 226  Q
    | |  |||||||| ||||| ||  ||||||| || || ||||||||| ||||||| ||||| ||||| ||||    
T  48965419 gtgcctttatgactcattgtggttggaactccacagtggaggctgttggtgcgggggttccgatgattacat 48965348  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 55 - 185
Target Start/End: Complemental strand, 48961486 - 48961353
Alignment:
Q  55 tggttaccgaagggatttgaagagagaaatatcg---ggaagaagggtttgatcattaggggttgggccccacaagttaagatattgagccaccctgcag 151  Q
    ||||| ||||| ||||||||||||||||| || |    |||||||||||||||||||| ||| |||||||||||||||| |||  || ||||| | || |    
T  48961486 tggttgccgaaaggatttgaagagagaaacattgaaaagaagaagggtttgatcattaaggggtgggccccacaagttatgatcctgggccacacagcgg 48961387  T
Q  152 tggggggatttatgacgcattgcggggggaactc 185  Q
    |||| |  |||||||||||||||||| |||||||    
T  48961386 tgggtgtgtttatgacgcattgcgggtggaactc 48961353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 55 - 221
Target Start/End: Original strand, 48912331 - 48912500
Alignment:
Q  55 tggttaccgaagggatttgaagagagaaatatcgg---gaagaagggtttgatcattaggggttgggccccacaagttaagatattgagccaccctgcag 151  Q
    ||||| || ||||| ||||||||||||| ||||||   |||||||| | |||| |||| ||||||||| ||||| |||| |||  |||||||| | || |    
T  48912331 tggttgccaaaggggtttgaagagagaattatcggaaagaagaaggctatgattattaagggttgggctccacaggttatgattctgagccacacagccg 48912430  T
Q  152 tggggggatttatgacgcattgcggggggaactcaaccgtagaggctgttagtgcgggagttccaatgat 221  Q
    |||| | ||||||||| ||||| ||| |||| || || || ||||| |||||||| || |||||||||||    
T  48912431 tgggtgcatttatgacacattgtgggtggaattccactgttgaggcagttagtgcaggggttccaatgat 48912500  T

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Target: scaffold0536 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 55 - 221
Target Start/End: Original strand, 6497 - 6666
Alignment:
Q  55 tggttaccgaagggatttgaagagagaaatatcgg---gaagaagggtttgatcattaggggttgggccccacaagttaagatattgagccaccctgcag 151  Q
    ||||| || |||||||| |||||||||||||||||   ||||||||||||||| |||||||||||||| |||||||||| ||| |||||||||   ||      
T  6497 tggttgccaaagggattcgaagagagaaatatcggaaagaagaagggtttgattattaggggttgggctccacaagttatgattttgagccacaaagctc 6596  T
Q  152 tggggggatttatgacgcattgcggggggaactcaaccgtagaggctgttagtgcgggagttccaatgat 221  Q
    |||| |  |||||||||||||| ||| |||| || || || |||||||||||||| || ||||| |||||    
T  6597 tgggtgcgtttatgacgcattgtgggtggaattccactgttgaggctgttagtgcaggggttccgatgat 6666  T

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Target: scaffold0536; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 90 - 221
Target Start/End: Original strand, 10517 - 10648
Alignment:
Q  90 gaagaagggtttgatcattaggggttgggccccacaagttaagatattgagccaccctgcagtggggggatttatgacgcattgcggggggaactcaacc 189  Q
    ||||||||||||||| |||| |||||||||||| || |||| |||  | |||||| |||  ||||| |  |||||||| ||||| ||| |||| || |||    
T  10517 gaagaagggtttgattattaagggttgggcccctcaggttatgattctaagccacactgttgtgggtgcgtttatgacacattgtgggtggaattccacc 10616  T
Q  190 gtagaggctgttagtgcgggagttccaatgat 221  Q
    || ||||| |||||||| || |||||||||||    
T  10617 gtggaggcggttagtgcaggggttccaatgat 10648  T

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Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 90 - 226
Target Start/End: Original strand, 12590196 - 12590332
Alignment:
Q  90 gaagaagggtttgatcattaggggttgggccccacaagttaagatattgagccaccctgcagtggggggatttatgacgcattgcggggggaactcaacc 189  Q
    ||||||||||||||||||||||||||||||||||||||| | |||  ||||||||  ||||||||| |  |||||||| ||||| ||  |||| ||   |    
T  12590196 gaagaagggtttgatcattaggggttgggccccacaagtaatgattatgagccacaatgcagtgggcgcgtttatgacacattgtggatggaattccgtc 12590295  T
Q  190 gtagaggctgttagtgcgggagttccaatgataacat 226  Q
    || ||||| |||||||| ||| |||| ||||| ||||    
T  12590296 gtggaggcggttagtgctggaattccgatgatcacat 12590332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 167
Target Start/End: Original strand, 12483492 - 12483568
Alignment:
Q  91 aagaagggtttgatcattaggggttgggccccacaagttaagatattgagccaccctgcagtggggggatttatgac 167  Q
    |||| |||||| ||||| ||||| ||||| ||||| ||   ||| |||||||||||||||||||| | |||||||||    
T  12483492 aagatgggtttaatcatcagggggtgggcaccacaggtactgattttgagccaccctgcagtgggtgcatttatgac 12483568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 91 - 221
Target Start/End: Original strand, 12641506 - 12641636
Alignment:
Q  91 aagaagggtttgatcattaggggttgggccccacaagttaagatattgagccaccctgcagtggggggatttatgacgcattgcggggggaactcaaccg 190  Q
    ||||| ||||| ||||||||||  |||||||||||||| | ||| || |||||| |||| ||||| | ||| |||||||||||||||  ||||||    |    
T  12641506 aagaaaggttttatcattagggagtgggccccacaagtaatgattttaagccacgctgctgtgggtgcattcatgacgcattgcgggtcgaactccttgg 12641605  T
Q  191 tagaggctgttagtgcgggagttccaatgat 221  Q
    |||||||||||||||| ||  ||||||||||    
T  12641606 tagaggctgttagtgcagggattccaatgat 12641636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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