View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15163_low_130 (Length: 233)
Name: NF15163_low_130
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_low_130 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 45244087 - 45243865
Alignment:
| Q |
1 |
cttatgttcccaaacgaacagctcccttctccatataaacctcc-----tcctgatcaccctcccaaatgtccgccaccttagcttcctgctgctccgaa |
95 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45244087 |
cttatgttcccaaacgaacagctcccttctccatataaacctccacccctcctgatcaccctcccaaatgtccgccaccttagcttcctgctgctccgaa |
45243988 |
T |
|
| Q |
96 |
ataagaaataatctagggaattgttcacaacggcatgcttcccacccacgtatccttccaaaagcaagtcatactaccatttcccacttttctccccaca |
195 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45243987 |
ataagaaataatctagggaattgttcacaacggcatgcttcccacccacgtatccttccaaaagcaagtcatactaccatttcccacttttctccccaca |
45243888 |
T |
|
| Q |
196 |
taattgctaaaccaatttgagcc |
218 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
45243887 |
taattgctaaaccaatttgagcc |
45243865 |
T |
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