View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15163_low_132 (Length: 231)

Name: NF15163_low_132
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15163_low_132
NF15163_low_132
[»] chr2 (3 HSPs)
chr2 (26-215)||(35223333-35223522)
chr2 (177-208)||(40837502-40837533)
chr2 (177-211)||(11513863-11513897)
[»] chr7 (9 HSPs)
chr7 (118-210)||(35536011-35536105)
chr7 (112-211)||(27121657-27121757)
chr7 (177-212)||(1417229-1417264)
chr7 (177-211)||(23918922-23918956)
chr7 (177-211)||(46825063-46825097)
chr7 (177-210)||(30456522-30456555)
chr7 (177-210)||(39591539-39591572)
chr7 (118-206)||(45344476-45344563)
chr7 (179-211)||(47046179-47046211)
[»] chr6 (3 HSPs)
chr6 (177-211)||(7713990-7714024)
chr6 (177-211)||(29274300-29274334)
chr6 (179-211)||(22742333-22742365)
[»] chr4 (4 HSPs)
chr4 (177-211)||(13949915-13949949)
chr4 (135-211)||(22684587-22684664)
chr4 (177-206)||(35533283-35533312)
chr4 (178-210)||(31038939-31038971)
[»] chr1 (3 HSPs)
chr1 (177-211)||(27738251-27738285)
chr1 (177-209)||(17628564-17628596)
chr1 (179-215)||(24460482-24460518)
[»] scaffold0024 (1 HSPs)
scaffold0024 (176-209)||(27540-27573)


Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 26 - 215
Target Start/End: Complemental strand, 35223522 - 35223333
Alignment:
Q  26 aaatcaataatcataataattatttccaaatgtttgtgttttagcctaatcggtgctgtattgtttcaagtcttcatttctttctctttgaataaacaac 125  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35223522 aaatcaataatcatattaattatttccaaatgtttgtgttttagcctaatcggtgctgtattgtttcaagtcttcatttctttctctttgaataaacaac 35223423  T
Q  126 ttaataagtgcttatcatataaacacttacgtataagctagcactataacgaagataaattaaagtcaaattgttttcatataagcatat 215  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  35223422 ttaataagtgcttatcatataaacacttacgtataagctagctctataaccaagataaattaaagtcaaattgttttcatataagcatat 35223333  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 208
Target Start/End: Complemental strand, 40837533 - 40837502
Alignment:
Q  177 aagataaattaaagtcaaattgttttcatata 208  Q
    ||||||||||||||||||||||||||||||||    
T  40837533 aagataaattaaagtcaaattgttttcatata 40837502  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 211
Target Start/End: Original strand, 11513863 - 11513897
Alignment:
Q  177 aagataaattaaagtcaaattgttttcatataagc 211  Q
    |||||||| ||||||||||||||||||||||||||    
T  11513863 aagataaaataaagtcaaattgttttcatataagc 11513897  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 210
Target Start/End: Original strand, 35536011 - 35536105
Alignment:
Q  118 taaacaacttaata-agtgcttatcatataaacacttacgtataagctagcactataacg-aagataaattaaagtcaaattgttttcatataag 210  Q
    |||||||||||||  || ||||||||||||||  |||| ||||||||||   |||||||  |||||||| |||||||||||||||||||||||||    
T  35536011 taaacaacttaattgagcgcttatcatataaaggcttatgtataagctatttctataacataagataaaataaagtcaaattgttttcatataag 35536105  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 112 - 211
Target Start/End: Complemental strand, 27121757 - 27121657
Alignment:
Q  112 tttgaataaacaacttaataagtgcttatcatataaacacttacgtataagctagcactataacgaa-gataaattaaagtcaaattgttttcatataag 210  Q
    |||| ||| ||||||||||||| |||||||||||||   |||| ||||||| ||   ||||||  || |||||| |||||||||||||||||||||||||    
T  27121757 tttggatacacaacttaataagcgcttatcatataattccttatgtataagatatttctataataaatgataaaataaagtcaaattgttttcatataag 27121658  T
Q  211 c 211  Q
    |    
T  27121657 c 27121657  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 212
Target Start/End: Original strand, 1417229 - 1417264
Alignment:
Q  177 aagataaattaaagtcaaattgttttcatataagca 212  Q
    |||||||| |||||||||||||||||||||||||||    
T  1417229 aagataaaataaagtcaaattgttttcatataagca 1417264  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 211
Target Start/End: Original strand, 23918922 - 23918956
Alignment:
Q  177 aagataaattaaagtcaaattgttttcatataagc 211  Q
    |||||||| ||||||||||||||||||||||||||    
T  23918922 aagataaaataaagtcaaattgttttcatataagc 23918956  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 211
Target Start/End: Original strand, 46825063 - 46825097
Alignment:
Q  177 aagataaattaaagtcaaattgttttcatataagc 211  Q
    |||||||| ||||||||||||||||||||||||||    
T  46825063 aagataaaataaagtcaaattgttttcatataagc 46825097  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 210
Target Start/End: Complemental strand, 30456555 - 30456522
Alignment:
Q  177 aagataaattaaagtcaaattgttttcatataag 210  Q
    |||||||| |||||||||||||||||||||||||    
T  30456555 aagataaaataaagtcaaattgttttcatataag 30456522  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 210
Target Start/End: Complemental strand, 39591572 - 39591539
Alignment:
Q  177 aagataaattaaagtcaaattgttttcatataag 210  Q
    |||||||| |||||||||||||||||||||||||    
T  39591572 aagataaaataaagtcaaattgttttcatataag 39591539  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 206
Target Start/End: Complemental strand, 45344563 - 45344476
Alignment:
Q  118 taaacaacttaataagtgcttatcatataaacacttacgtataagctagcactataacgaagataaattaaagtcaaattgttttcata 206  Q
    |||||||||||  |||  ||||||||||| | ||||| ||||||||||   ||| ||| ||||||||  ||||||||||||||||||||    
T  45344563 taaacaacttatgaagcacttatcatatacatacttatgtataagctatttctacaac-aagataaaacaaagtcaaattgttttcata 45344476  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 47046211 - 47046179
Alignment:
Q  179 gataaattaaagtcaaattgttttcatataagc 211  Q
    |||||| ||||||||||||||||||||||||||    
T  47046211 gataaaataaagtcaaattgttttcatataagc 47046179  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 211
Target Start/End: Original strand, 7713990 - 7714024
Alignment:
Q  177 aagataaattaaagtcaaattgttttcatataagc 211  Q
    |||||||| ||||||||||||||||||||||||||    
T  7713990 aagataaaataaagtcaaattgttttcatataagc 7714024  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 211
Target Start/End: Complemental strand, 29274334 - 29274300
Alignment:
Q  177 aagataaattaaagtcaaattgttttcatataagc 211  Q
    |||||||| ||||||||||||||||||||||||||    
T  29274334 aagataaaataaagtcaaattgttttcatataagc 29274300  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 22742333 - 22742365
Alignment:
Q  179 gataaattaaagtcaaattgttttcatataagc 211  Q
    |||||| ||||||||||||||||||||||||||    
T  22742333 gataaaataaagtcaaattgttttcatataagc 22742365  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 211
Target Start/End: Complemental strand, 13949949 - 13949915
Alignment:
Q  177 aagataaattaaagtcaaattgttttcatataagc 211  Q
    |||||||| ||||||||||||||||||||||||||    
T  13949949 aagataaaataaagtcaaattgttttcatataagc 13949915  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 211
Target Start/End: Complemental strand, 22684664 - 22684587
Alignment:
Q  135 gcttatcatataaacacttacgtataagctagcactataacgaa-gataaattaaagtcaaattgttttcatataagc 211  Q
    ||||||||||||||  |||  ||||||||||   ||||||| || | |||| ||||||||||||||||||||||||||    
T  22684664 gcttatcatataaatgcttctgtataagctatttctataacaaacggtaaaataaagtcaaattgttttcatataagc 22684587  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 206
Target Start/End: Complemental strand, 35533312 - 35533283
Alignment:
Q  177 aagataaattaaagtcaaattgttttcata 206  Q
    ||||||||||||||||||||||||||||||    
T  35533312 aagataaattaaagtcaaattgttttcata 35533283  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 210
Target Start/End: Complemental strand, 31038971 - 31038939
Alignment:
Q  178 agataaattaaagtcaaattgttttcatataag 210  Q
    ||||||| |||||||||||||||||||||||||    
T  31038971 agataaaataaagtcaaattgttttcatataag 31038939  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 211
Target Start/End: Complemental strand, 27738285 - 27738251
Alignment:
Q  177 aagataaattaaagtcaaattgttttcatataagc 211  Q
    |||||||| ||||||||||||||||||||||||||    
T  27738285 aagataaaataaagtcaaattgttttcatataagc 27738251  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 209
Target Start/End: Original strand, 17628564 - 17628596
Alignment:
Q  177 aagataaattaaagtcaaattgttttcatataa 209  Q
    |||||||| ||||||||||||||||||||||||    
T  17628564 aagataaagtaaagtcaaattgttttcatataa 17628596  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 215
Target Start/End: Complemental strand, 24460518 - 24460482
Alignment:
Q  179 gataaattaaagtcaaattgttttcatataagcatat 215  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  24460518 gataaattaaagtcaaactgttttcatataatcatat 24460482  T

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Target: scaffold0024 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 209
Target Start/End: Original strand, 27540 - 27573
Alignment:
Q  176 gaagataaattaaagtcaaattgttttcatataa 209  Q
    ||||||||| ||||||||||||||||||||||||    
T  27540 gaagataaaataaagtcaaattgttttcatataa 27573  T

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