View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15163_low_133 (Length: 231)
Name: NF15163_low_133
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_low_133 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 15 - 214
Target Start/End: Complemental strand, 10125775 - 10125576
Alignment:
| Q |
15 |
gaaaagaataaagtgttttgttatatgtaattaaaacgcattaagaacttaccatttgacacacgtgtgcaagggttacttctatgtccactacattcaa |
114 |
Q |
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| T |
10125775 |
gaaaagaataaagtgttttgttatatgtaattaaaacgcattaagaacttaccatttgacacacgtgtgcaagggttacttctatgtccactacattcaa |
10125676 |
T |
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| Q |
115 |
cttccacaaagaattcaacaaagtgtctttattaagacgaatatgggagtcaacattttcagggcaactaccacttgttttaaattgcttgctgagttct |
214 |
Q |
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| T |
10125675 |
cttccacaaagaattcaacaaagtgtctttattaagacgaatatgggagtcaacattttcagggcaactaccacttgttttaaattgcttgctgagttct |
10125576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 52 - 214
Target Start/End: Complemental strand, 10119143 - 10118978
Alignment:
| Q |
52 |
gcattaagaacttaccatttgacacacgtgtgcaagggttacttctatgtccactacattcaacttccacaaagaattcaaca-aagtgtct--ttatta |
148 |
Q |
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| T |
10119143 |
gcattaagaactcaccatttgacacacgtgtgcaagggttacttctatgtctgctacatttatcttccacaaagaattcaatataaatgtctcctgatca |
10119044 |
T |
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| Q |
149 |
agacgaatatgggagtcaacattttcagggcaactaccacttgttttaaattgcttgctgagttct |
214 |
Q |
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| T |
10119043 |
ggacgaatatgtgagtcaacattttcggggcaactaccacccgtttcagattgcttgcggagttct |
10118978 |
T |
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