View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15163_low_137 (Length: 221)
Name: NF15163_low_137
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_low_137 |
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Alignment Details
Target: chr1 (Bit Score: 122; Significance: 9e-63; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 20 - 141
Target Start/End: Original strand, 26785949 - 26786070
Alignment:
| Q |
20 |
catcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttctgttgtccctaacttc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26785949 |
catcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttctgttgtccctaacttc |
26786048 |
T |
|
| Q |
120 |
atactttatgttcacacctttg |
141 |
Q |
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|||||||||||||||||||||| |
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| T |
26786049 |
atactttatgttcacacctttg |
26786070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 20 - 141
Target Start/End: Original strand, 26791689 - 26791810
Alignment:
| Q |
20 |
catcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttctgttgtccctaacttc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26791689 |
catcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttctgttgtccctaacttc |
26791788 |
T |
|
| Q |
120 |
atactttatgttcacacctttg |
141 |
Q |
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|||||||||||||||||||||| |
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| T |
26791789 |
atactttatgttcacacctttg |
26791810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 20 - 141
Target Start/End: Original strand, 26822590 - 26822711
Alignment:
| Q |
20 |
catcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttctgttgtccctaacttc |
119 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26822590 |
catcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttctgttgtccctaacttc |
26822689 |
T |
|
| Q |
120 |
atactttatgttcacacctttg |
141 |
Q |
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|||||||||||||||||||||| |
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| T |
26822690 |
atactttatgttcacacctttg |
26822711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 20 - 148
Target Start/End: Original strand, 26832667 - 26832795
Alignment:
| Q |
20 |
catcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttctgttgtccctaacttc |
119 |
Q |
| |
|
|||||||||| |||||||| ||||||||| |||| |||||||||||||||||||||| ||||| |||||||| |||||||| |||||||||||||| |
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| T |
26832667 |
catcaaagatagcaacataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgtaaccatttctattgtccctaacttc |
26832766 |
T |
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| Q |
120 |
atactttatgttcacacctttgcttctcc |
148 |
Q |
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|
||||||||| ||||||||||||||||||| |
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| T |
26832767 |
atactttatattcacacctttgcttctcc |
26832795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 20 - 148
Target Start/End: Complemental strand, 41546339 - 41546211
Alignment:
| Q |
20 |
catcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttctgttgtccctaacttc |
119 |
Q |
| |
|
||||||||||||||||||| ||||| || ||||| ||||| |||||||| || || ||||||||||||||||| |||||||| || ||||| | || |
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| T |
41546339 |
catcaaagatggcaacatagtcacaaagtttgacatagctatgcttcattccttctttaagagcaccagctttgtaaccatttctattttcccttatctc |
41546240 |
T |
|
| Q |
120 |
atactttatgttcacacctttgcttctcc |
148 |
Q |
| |
|
|||||||||||| | ||||| ||||||| |
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|
| T |
41546239 |
atactttatgtttatgccttttcttctcc |
41546211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 58 - 144
Target Start/End: Complemental strand, 41917525 - 41917439
Alignment:
| Q |
58 |
ctatgtttcattccctcctttagagcaccagctttgtacccatttctgttgtccctaacttcatactttatgttcacacctttgctt |
144 |
Q |
| |
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||||| |||||||| || |||| ||| || |||||||| |||||||| ||||||||||||||||||||||| ||||| ||||||||| |
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| T |
41917525 |
ctatgcttcattccttcttttaaagcccctgctttgtatccatttctattgtccctaacttcatactttatattcactcctttgctt |
41917439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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