View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15163_low_138 (Length: 203)
Name: NF15163_low_138
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_low_138 |
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Alignment Details
Target: chr4 (Bit Score: 132; Significance: 9e-69; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 44 - 187
Target Start/End: Complemental strand, 11128594 - 11128451
Alignment:
| Q |
44 |
tccaattcatctcctccggtaaacacgataatcatgtagtcaacaattttgcttccaaataatttctgcacgctacgcagagcactctcttcttcctcag |
143 |
Q |
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| T |
11128594 |
tccaattcatctcctccggtaaacacgataatcatgtaatcaacaattttgcttccaaataatttctgcacgctacgcagagcactctcttcttcctcag |
11128495 |
T |
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| Q |
144 |
taaatcttgttctaacagacaatactacaatcaaggcatggatt |
187 |
Q |
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| T |
11128494 |
taaatcgtgttctaacagagaatactacaatcaaggcatggatt |
11128451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 44 - 174
Target Start/End: Complemental strand, 11111575 - 11111445
Alignment:
| Q |
44 |
tccaattcatctcctccggtaaacacgataatcatgtagtcaacaattttgcttccaaataatttctgcacgctacgcagagcactctcttcttcctcag |
143 |
Q |
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| T |
11111575 |
tccaattcatctcccccggtaaagaccacaatcatgtggtcaacaattttgcttccaaataatttctgcacgttacgcagggcattttcttcttcctcgg |
11111476 |
T |
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| Q |
144 |
taaatcttgttctaacagacaatactacaat |
174 |
Q |
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| T |
11111475 |
tgaatcgtgttctaacagagaatactacaat |
11111445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 11128658 - 11128612
Alignment:
| Q |
1 |
aagaacctttaaaggctctggacaatcgcggcctaaatactggtcca |
47 |
Q |
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| T |
11128658 |
aagaacctttaaaggctctggacaatcgcggcctaaatactggtcca |
11128612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 73 - 162
Target Start/End: Complemental strand, 11077469 - 11077380
Alignment:
| Q |
73 |
aatcatgtagtcaacaattttgcttccaaataatttctgcacgctacgcagagcactctcttcttcctcagtaaatcttgttctaacaga |
162 |
Q |
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| T |
11077469 |
aatcatatagtcaacaatcttgcttccaaataatgtctgcaagctgcgtagagcattttcttcttcctcactaaatcgtgatctaacaga |
11077380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 162
Target Start/End: Complemental strand, 11089480 - 11089392
Alignment:
| Q |
74 |
atcatgtagtcaacaattttgcttccaaataatttctgcacgctacgcagagcactctcttcttcctcagtaaatcttgttctaacaga |
162 |
Q |
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| T |
11089480 |
atcatatagtcaaaaatcttgcttccaaataatgtctgcaagctgcacagagcattttcttcttcctcgctaaatcgtgatctgacaga |
11089392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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