View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15163_low_14 (Length: 549)
Name: NF15163_low_14
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 20 - 488
Target Start/End: Original strand, 53615590 - 53616058
Alignment:
| Q |
20 |
tccatcacaatgtatatttttgtttttgtgccaataacctgttttatgatgaaattcattcaaaaattaatactagtgagtgagaaagggattgtgaatc |
119 |
Q |
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| T |
53615590 |
tccatcacaatgtatatttttgtttttgtgccaataacctgttttatgatgaaattcattcaaaaattaatactagtgagtgagaaagggattgtgaatc |
53615689 |
T |
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| Q |
120 |
ttcaagactcacaagaattccaacaccagcaggtataatatacctcatgaattctaactatatttggatgatgtagaagtttcattgttctaatctcact |
219 |
Q |
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| T |
53615690 |
ttcaagactcacaagaattccaacaccagcaggtataatatacctcatgaattctaactatatttggatgatgtagaagtttcattgttctaatctcact |
53615789 |
T |
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| Q |
220 |
ttgtacctgaaacatgttttggccttaatatttgaagtaaaatacctaatttttgaagggggaaaaagaaggaccaaaatgaggtttacctgatgtttta |
319 |
Q |
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| T |
53615790 |
ttgtacctgaaacatgttttggccttaatatttgaagtaaaatacctactttttgaagggggaaaaagaaggaccaaaatgaggtttacctgatgtttta |
53615889 |
T |
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| Q |
320 |
gattgtttttcaagaccatttgtttgtcaatgaccttgattgctaccttctcaccattgttgctatttaaagcaatctttaccttagagaatgtaccttc |
419 |
Q |
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| T |
53615890 |
gattgtttttcaagaccatttgtttgtcaatgaccttgattgctaccttctcaccattgttgctatttaaagcaatctttaccttagagaatgtaccttc |
53615989 |
T |
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| Q |
420 |
tcctattgtcctgccaagtctatattttcctatgtttttgggagacaccatttctctgtttgtgtctgg |
488 |
Q |
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| T |
53615990 |
tcctattgtcctgccaagtctatattttcctatgtttttgggagacaccatttctctgtttgtgtctgg |
53616058 |
T |
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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 201 - 251
Target Start/End: Original strand, 17923526 - 17923576
Alignment:
| Q |
201 |
tcattgttctaatctcactttgtacctgaaacatgttttggccttaatatt |
251 |
Q |
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| T |
17923526 |
tcattgttctaatctcactttgtacctgaaacatggtttggccataatatt |
17923576 |
T |
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