View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15163_low_15 (Length: 543)
Name: NF15163_low_15
Description: NF15163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15163_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 289 - 531
Target Start/End: Complemental strand, 8440233 - 8439991
Alignment:
| Q |
289 |
ggggtttgccaatgtcttccaattcattatttgtttttgtagctaggtgtgaatcgcaagcttctttcaaaggggacatgaaccatgattgctaccttat |
388 |
Q |
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| T |
8440233 |
ggggtttgccaatgtcttccaattcactatttgtttttgtagctaggtgtgaatcacaagcttctttcaaaggggacatgaaccatgattgctaccttat |
8440134 |
T |
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| Q |
389 |
aggtgctaattttaacatttttcattgaaagggcaatgaagatatgtaatgtatgttcactttctagagcccagactctagcagcatctcactcaataca |
488 |
Q |
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| T |
8440133 |
aggtgctaattttaacatttttcattgaaagggcaatgaagatatgtaatgtatgttcactttctagagcccagactctagcagcatctcactcaataca |
8440034 |
T |
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| Q |
489 |
ccatgattaaaaccgattttaagacccctcttgatggaatttt |
531 |
Q |
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| T |
8440033 |
ccatgattaaaaccgattttaagacccctcttgatggaatttt |
8439991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 8440504 - 8440310
Alignment:
| Q |
19 |
agttggtgaagaaaaatcaccataatcaacttaannnnnnn-ccataaagtaatcttatttaagtcgtgtttgtcactaaaaaataaatagtcnnnnnnn |
117 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| | |||||||||||||||| |
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| T |
8440504 |
agttggtgaagaaaaatcaccataatcaacttaattttttttccataaagtaatcttatttaagtcgttattgttattaaaaaataaatagtcttttttt |
8440405 |
T |
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| Q |
118 |
cagttaaaattcaaacattatttcatcatattgtaaaatcttacaattttattagactaaactctctttagttattcaactcaattcttcacttg |
212 |
Q |
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| T |
8440404 |
cagttaaaattcaaacattaattcatcatactctaaaatcttacaattttattagactaaactctctttaattattcaactcaattcttcacttg |
8440310 |
T |
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